Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4163g00001 ATGGCTAGGAGCTGGCTTATTGACATAGGAGGATTTGCAAAGAAAGTGAAAAACACTACTCTATCTTCAGCTGATCAAATTAAGGATTGTGGGGCATATCGTGAATGCCCGAATTGTCATTACCATATCGATAACAGTGATGTTTCTACTGAGTGGCCTGGCTTTCCTGTTGGTGTAAAGTTTGATCCTTCTGATGTAGAACTCTTAGAACATTTAGCAGCAAAATGTGGCGTTGGGAACACAGAGCCGCACATGTTTATCCATGAGTTCATCCCAACACTGGAAGGAGACCAAGGTATTTGCTACACACATCCAGAAAATCTTCCAGGTGCTAAGAAAGATGGGAGCAATGTCCATTTCTTTCACAGAACTATTAATGCATTTACAACTGGTCAACGAAAGCGCAGAAAGATTCATCATGATGGTTTGAGCGAAGAGCATGTGCGTTGGCATAAGACTGGTAAGACCAAAGCTATAGTAGAAGATGGTGTACATAAGGGCTTTAAGAAGATCATGGTTCTTTATATAAAATCTGAGAAAGGGTCCAAGCCCTATAAATCCAACTGGGTAATGCATCAGTACCATCTAGGGACTGAAGAAGATGAGAAGGATGGTGAATATGTGGTTTCAAAAATATTCTATCAGCAGCAAAAGCAGAGTGAGAAGAATGAGGAGAATCCAGTGGCTGAAGATTCAGACAATATAACATCACGAACAAGTCCAAGGACTCCAAAACCAAATCCCCCCAATCCACCTCGTATAGGAAAATGTGTTGACTGTGATGACATTATTGGTGAAATTGCACTCCAGGATGCCAAGTCTATCCCTGGAGGATCACAGGCTCAGCAATTTGATATTCAGGATCAGGAGAATACAAGCAATCCTGCATGGTTGGCTGGTGAATCCCAGGCTTTGGAAAACTCTGGATTTGGCGGCTTGGATGACATATTATTATGCCCGGAAATCTTGGATTCTTTTGCTCTATTGAATGATTCTGGATTGGACTCTGCCATTCTCAATGGTTTTGCTTGCAATGGAAATGAAATGGCTGGAAATGATAATGCATCATGTGGAATTTCTTTTCTGGATACACTGCAATTGGGTACTCCTCCAGATTTTGATCCTTCTAATTTGGAATTTTGTTCTCAAGACAGTATATTTGAGTGGATTGACAGGTTATGA 1182 0.4112 MARSWLIDIGGFAKKVKNTTLSSADQIKDCGAYRECPNCHYHIDNSDVSTEWPGFPVGVKFDPSDVELLEHLAAKCGVGNTEPHMFIHEFIPTLEGDQGICYTHPENLPGAKKDGSNVHFFHRTINAFTTGQRKRRKIHHDGLSEEHVRWHKTGKTKAIVEDGVHKGFKKIMVLYIKSEKGSKPYKSNWVMHQYHLGTEEDEKDGEYVVSKIFYQQQKQSEKNEENPVAEDSDNITSRTSPRTPKPNPPNPPRIGKCVDCDDIIGEIALQDAKSIPGGSQAQQFDIQDQENTSNPAWLAGESQALENSGFGGLDDILLCPEILDSFALLNDSGLDSAILNGFACNGNEMAGNDNASCGISFLDTLQLGTPPDFDPSNLEFCSQDSIFEWIDRL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4163g00001 393 Gene3D NAC domain 64 220 IPR036093 GO:0003677|GO:0006355
Gabi4163g00001 393 FunFam NAC domain-containing protein 8 64 219 - -
Gabi4163g00001 393 Pfam No apical meristem (NAM) protein 56 196 IPR003441 GO:0003677|GO:0006355
Gabi4163g00001 393 SUPERFAMILY NAC domain 39 215 IPR036093 GO:0003677|GO:0006355
Gabi4163g00001 393 MobiDBLite consensus disorder prediction 217 255 - -
Gabi4163g00001 393 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 306 IPR044799 GO:0003700
Gabi4163g00001 393 ProSiteProfiles NAC domain profile. 55 215 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4163g00001 Gabi-Chr4163 36437 41181 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4163g00001 36 217 NAC Transcription Factor Family AT1G28470 56.684 4.48e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi4163g00001 NAM 4.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4163g00001 - - gmx:100794879 616.69