Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4157g00010 ATGGCTCCTGCCACCTCATCGCCGGCGGCTCAGAGGCACATCGGCTTCAGCCGGCGCACGCAGGCACCGCGGCGACCGGCTGACTCTCCGCCGGCAAAGAAGTATAGGTCGTTGAAGGAGATAATGGCGAGGGCGAGCTATGCGGTGGTGGAACGCGAGGATTACAGCGACCTGACCTGCGAGCAATGCGGCTCCGGCGAGCGGCCGGAGGAGCTGCTTCTGTGCGACAAATGCGACAAAGGCTTCCACATGAAATGCGTGAGGCCAATCGCGGTCAGGGTCCCGATTGGATCATGGCTTTGCCCTAAGTGTTCGGGAGAGAAGAGAGTGAGAAATGCTAAGAAGCGTCGTAGACGTTCAGGATCCCTGGTATTACAAAAGAAAAAGAGGAAATTATTACCATTTATTCCTTCAGAAGATCCTGCCCAGAGACTGAAACAGATGGGTTCCCTTGCTTCTGCTTTGACAGCATTGCATATGGAATTCAGTGATCAACTCACATACTGGCCTGGAATGGCTCCTAGATCTGCTAATCAAGCCAAATTAGAAAACGGTGGCATGCAGGTTCTTTCCAAGGAAGATATAGAGACCTTGGAACACTGCATAGCTATGTCTACAAGAGGCGAATGCCCTCCCTTTTTGATTGTTTTTGATTCATGTGAAGGCTTTACTGTGGAGGCTGATGGCCCGATCAAGGATATGACATTTATTGCTGAATACACTGGTGATGTGGATTACATTAAGAACCGAGAGTATGATGATTGTGACAGTATGATGACCCTTCTTCTTGCAGCAAATCCTTCTGACAGTCTTGTCATCTGTGCTGATAAACGTGGAAACATTGCCCGCTTTATCAATGGCATCAACAATCATACTTTGGAAGGTAGGAAGAAGCAGAACTGTAAATGTGTGAGATACAATGTTAACGGTGAATGCAGGGTCTTTTTGGTTGCTACTCGAGATATTTCTAAGGGCGAGAGGCTTTATTATGATTATAATGGTTATGAGCATGAATATCCAACTCATCATTTTGTCTGA 1038 0.4769 MAPATSSPAAQRHIGFSRRTQAPRRPADSPPAKKYRSLKEIMARASYAVVEREDYSDLTCEQCGSGERPEELLLCDKCDKGFHMKCVRPIAVRVPIGSWLCPKCSGEKRVRNAKKRRRRSGSLVLQKKKRKLLPFIPSEDPAQRLKQMGSLASALTALHMEFSDQLTYWPGMAPRSANQAKLENGGMQVLSKEDIETLEHCIAMSTRGECPPFLIVFDSCEGFTVEADGPIKDMTFIAEYTGDVDYIKNREYDDCDSMMTLLLAANPSDSLVICADKRGNIARFINGINNHTLEGRKKQNCKCVRYNVNGECRVFLVATRDISKGERLYYDYNGYEHEYPTHHFV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4157g00010 345 SMART set_7 211 339 IPR001214 GO:0005515
Gabi4157g00010 345 Pfam SET domain 251 333 IPR001214 GO:0005515
Gabi4157g00010 345 ProSitePatterns Zinc finger PHD-type signature. 60 104 IPR019786 -
Gabi4157g00010 345 SUPERFAMILY FYVE/PHD zinc finger 26 105 IPR011011 -
Gabi4157g00010 345 MobiDBLite consensus disorder prediction 1 34 - -
Gabi4157g00010 345 CDD PHD_RSF1 60 104 - -
Gabi4157g00010 345 Gene3D SET domain 119 345 IPR046341 -
Gabi4157g00010 345 FunFam Histone-lysine N-methyltransferase ATXR5 117 345 - -
Gabi4157g00010 345 ProSiteProfiles SET domain profile. 211 333 IPR001214 GO:0005515
Gabi4157g00010 345 CDD SET_ATXR5_6-like 208 345 - -
Gabi4157g00010 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 118 IPR013083 -
Gabi4157g00010 345 SMART PHD_3 59 105 IPR001965 -
Gabi4157g00010 345 SUPERFAMILY SET domain 205 333 IPR046341 -
Gabi4157g00010 345 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 111 343 - -
Gabi4157g00010 345 Pfam PHD-finger 60 105 IPR019787 -
Gabi4157g00010 345 ProSiteProfiles Zinc finger PHD-type profile. 57 107 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4157g00010 Gabi-Chr4157 62667 66726 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4157g00010 32 121 C2H2 Transcription Factor Family AT3G01460 31.579 9.46e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi4157g00010 SET 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4157g00010 K24406 - tcc:18611813 565.844