Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4157g00009 ATGGCTCCTGCCACCTCATCGCCGGCGGCTCAGAGGCACATCGGCTTCAGCCGGCGCACGCAGGCACCGCGGCGACCGGCTGACTCTCCGCCGGCAAAGAAGTATAGGTCGTTGAAGGAGATAATGGCGAGGGCGAGCTATGCGGTGGTGGAACGCGAGGATTACAGCGACCTGACCTGCGAGCAATGCGGCTCCGGCGAGCGGCCGGAGGAGCTGCTTCTGTGCGACAAATGCGACAAAGGCTTCCACATGAAATGCGTGAGGCCAATCGCGGTCAGGGTCCCGATTGGATCATGGCTTTGCCCTAAGTGTTCGGGAGAGAAGAGAGTGAGAAGTTTATCTCAGAAGAAGATTATTGATTTCTTCGGGATTCAGAAATGTGCTATTCTGACACTAAGATCAAATCGAACAAACATGAAGCGTCGTAGACGTTCAGGATCCCTGGTATTACAAAAGAAAAAGAGGAAATTATTACCATTTATTCCTTCAGAAGATCCTGCCCAGAGACTGAAACAGATGGGTTCCCTTGCTTCTGCTTTGACAGCATTGCATATGGAATTCAGTGATCAACTCACATACTGGCCTGGAATGGCTCCTAGATCTGCTAATCAAGCCAAATTAGAAAACGGTGGCATGCAGGTTCTTTCCAAGGAAGATATAGAGACCTTGGAACACTGCATAGCTATGTCTACAAGAGGCGAATGCCCTCCCTTTTTGATTGTTTTTGATTCATGTGAAGGCTTTACTGTGGAGGCTGATGGCCCGATCAAGGATATGACATTTATTGCTGAATACACTGGTGATGTGGATTACATTAAGAACCGAGAGTATGATGATTGTGACAGTATGATGACCCTTCTTCTTGCAGCAAATCCTTCTGACAGTCTTGTCATCTGTGCTGATAAACGTGGAAACATTGCCCGCTTTATCAATGGCATCAACAATCATACTTTGGAAGGTAGGAAGAAGCAGAACTGTAAATGTGTGAGATACAATGTTAACGGTGAATGCAGGGTCTTTTTGGTTGCTACTCGAGATATTTCTAAGGGCGAGAGGCTTTATTATGATTATAATGGTTATGAGCATGAATATCCAACTCATCATTTTGTCTGA 1113 0.4672 MAPATSSPAAQRHIGFSRRTQAPRRPADSPPAKKYRSLKEIMARASYAVVEREDYSDLTCEQCGSGERPEELLLCDKCDKGFHMKCVRPIAVRVPIGSWLCPKCSGEKRVRSLSQKKIIDFFGIQKCAILTLRSNRTNMKRRRRSGSLVLQKKKRKLLPFIPSEDPAQRLKQMGSLASALTALHMEFSDQLTYWPGMAPRSANQAKLENGGMQVLSKEDIETLEHCIAMSTRGECPPFLIVFDSCEGFTVEADGPIKDMTFIAEYTGDVDYIKNREYDDCDSMMTLLLAANPSDSLVICADKRGNIARFINGINNHTLEGRKKQNCKCVRYNVNGECRVFLVATRDISKGERLYYDYNGYEHEYPTHHFV 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4157g00009 370 Gene3D SET domain 142 370 IPR046341 -
Gabi4157g00009 370 SMART set_7 236 364 IPR001214 GO:0005515
Gabi4157g00009 370 SUPERFAMILY SET domain 230 358 IPR046341 -
Gabi4157g00009 370 FunFam Histone-lysine N-methyltransferase ATXR5 142 370 - -
Gabi4157g00009 370 ProSitePatterns Zinc finger PHD-type signature. 60 104 IPR019786 -
Gabi4157g00009 370 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 130 368 - -
Gabi4157g00009 370 CDD SET_ATXR5_6-like 233 370 - -
Gabi4157g00009 370 MobiDBLite consensus disorder prediction 1 34 - -
Gabi4157g00009 370 CDD PHD_RSF1 60 104 - -
Gabi4157g00009 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 119 IPR013083 -
Gabi4157g00009 370 SUPERFAMILY FYVE/PHD zinc finger 26 105 IPR011011 -
Gabi4157g00009 370 SMART PHD_3 59 105 IPR001965 -
Gabi4157g00009 370 ProSiteProfiles SET domain profile. 236 358 IPR001214 GO:0005515
Gabi4157g00009 370 Pfam SET domain 276 358 IPR001214 GO:0005515
Gabi4157g00009 370 ProSiteProfiles Zinc finger PHD-type profile. 57 107 IPR019787 -
Gabi4157g00009 370 Pfam PHD-finger 60 105 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4157g00009 Gabi-Chr4157 62667 66726 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4157g00009 32 110 C2H2 Transcription Factor Family AT3G01460 31.646 2.89e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi4157g00009 SET 2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4157g00009 K24406 - tcc:18611813 599.742