Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4157g00007 ATGGCTCCTGCCACCTCATCGCCGGCGGCTCAGAGGCACATCGGCTTCAGCCGGCGCACGCAGGCACCGCGGCGACCGGCTGACTCTCCGCCGGCAAAGAAGTATAGGTCGTTGAAGGAGATAATGGCGAGGGCGAGCTATGCGGTGGTGGAACGCGAGGATTACAGCGACCTGACCTGCGAGCAATGCGGCTCCGGCGAGCGGCCGGAGGAGCTGCTTCTGTGCGACAAATGCGACAAAGGCTTCCACATGAAATGCGTGAGGCCAATCGCGGTCAGGGTCCCGATTGGATCATGGCTTTGCCCTAAGTGTTCGGGAGAGAAGAGAGTGAGAAGTTTATCTCAGAAGAAGATTATTGATTTCTTCGGGATTCAGAAATGTGCTATTCGTGCTAAAGACAAACGTTCTTCTTCTCAGGGTAATAAGCGTCGTAGACGTTCAGGATCCCTGGTATTACAAAAGAAAAAGAGGAAATTATTACCATTTATTCCTTCAGAAGATCCTGCCCAGAGACTGAAACAGATGGGTTCCCTTGCTTCTGCTTTGACAGCATTGCATATGGAATTCAGTGATCAACTCACATACTGGCCTGGAATGGCTCCTAGATCTGCTAATCAAGCCAAATTAGAAAACGGTGGCATGCAGGTTCTTTCCAAGGAAGATATAGAGACCTTGGAACACTGCATAGCTATGTCTACAAGAGGCGAATGCCCTCCCTTTTTGATTGTTTTTGATTCATGTGAAGGCTTTACTGTGGAGGCTGATGGCCCGATCAAGGATATGACATTTATTGCTGAATACACTGGTGATGTGGATTACATTAAGAACCGAGAGTATGATGATTGTGACAGTATGATGACCCTTCTTCTTGCAGCAAATCCTTCTGACAGTCTTGTCATCTGTGCTGATAAACGTGGAAACATTGCCCGCTTTATCAATGGCATCAACAATCATACTTTGGAAGGTAGGAAGAAGCAGAACTGTAAATGTGTGAGATACAATGTTAACGGTGAATGCAGGGTCTTTTTGGTTGCTACTCGAGATATTTCTAAGGGCGAGAGGCTTTATTATGATTATAATGGTTATGAGCATGAATATCCAACTCATCATTTTGTCTGA 1119 0.4683 MAPATSSPAAQRHIGFSRRTQAPRRPADSPPAKKYRSLKEIMARASYAVVEREDYSDLTCEQCGSGERPEELLLCDKCDKGFHMKCVRPIAVRVPIGSWLCPKCSGEKRVRSLSQKKIIDFFGIQKCAIRAKDKRSSSQGNKRRRRSGSLVLQKKKRKLLPFIPSEDPAQRLKQMGSLASALTALHMEFSDQLTYWPGMAPRSANQAKLENGGMQVLSKEDIETLEHCIAMSTRGECPPFLIVFDSCEGFTVEADGPIKDMTFIAEYTGDVDYIKNREYDDCDSMMTLLLAANPSDSLVICADKRGNIARFINGINNHTLEGRKKQNCKCVRYNVNGECRVFLVATRDISKGERLYYDYNGYEHEYPTHHFV 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4157g00007 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 119 IPR013083 -
Gabi4157g00007 372 ProSitePatterns Zinc finger PHD-type signature. 60 104 IPR019786 -
Gabi4157g00007 372 Pfam PHD-finger 60 105 IPR019787 -
Gabi4157g00007 372 SMART set_7 238 366 IPR001214 GO:0005515
Gabi4157g00007 372 CDD PHD_RSF1 60 104 - -
Gabi4157g00007 372 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 134 370 - -
Gabi4157g00007 372 SUPERFAMILY FYVE/PHD zinc finger 26 105 IPR011011 -
Gabi4157g00007 372 SMART PHD_3 59 105 IPR001965 -
Gabi4157g00007 372 MobiDBLite consensus disorder prediction 1 33 - -
Gabi4157g00007 372 Pfam SET domain 278 360 IPR001214 GO:0005515
Gabi4157g00007 372 FunFam Histone-lysine N-methyltransferase ATXR5 144 372 - -
Gabi4157g00007 372 CDD SET_ATXR5_6-like 235 372 - -
Gabi4157g00007 372 SUPERFAMILY SET domain 232 360 IPR046341 -
Gabi4157g00007 372 ProSiteProfiles SET domain profile. 238 360 IPR001214 GO:0005515
Gabi4157g00007 372 Gene3D SET domain 144 372 IPR046341 -
Gabi4157g00007 372 ProSiteProfiles Zinc finger PHD-type profile. 57 107 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4157g00007 Gabi-Chr4157 62667 66726 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4157g00007 32 110 C2H2 Transcription Factor Family AT3G01460 31.646 2.55e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi4157g00007 SET 2.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4157g00007 K24406 - gmx:100785817 608.986