Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4156g00006 ATGGATACCCAAACAGACAAGAGTCAGACACAAAAGGAAGATCAGAAACACCCACATGACTCAGTTCCTCATCTTCTACTAGATCTAAGTCTCTCCAGCAAGGATTCAGGTGATGACTCAAAACCAGAACTCAACCTCCTCAATTGTTTGGATACAAATTTATCAGAAAACTCCTCAGAATCTAGTCAAGGAAATGAACTGGATCCCCGGGTATTCTCATGCAACTACTGCCAGAGAAAATTTTATAGTTCCCAGGCATTAGGGGGACACCAAAATGCACACAAGCGTGAAAGAACTTTGGCAAGAAGAGGATACAAAGCTGGTGCTGCAGTTTCATTAGATTTTGGACAGAGGTACTCTAGTATGGCTTCTCTTCCTTCACATGGCTTATGTAACAAACCACTTGGAATTCAGGTGCATTCTATGATTAACAAACCTTCTTATCAAACACCCTTTTTTGGTTTGTGTCGTTCCCATGGCCAAAACGGGTGGCTGAGGCAGCCTTTGAATTCACAACCAGCTATTGGGAAGCTTTCATGGGGCAATTTTCATGGTGGAACAGAAACTGAATCATCCTTGGCCGGTGGCATTTCAAGGTTGGGGAAGTTTTCTACAAGGCTTGTAACAGAAGGATTTGGAGGTTACTGGTTGGATAGCATTACCCATTTGAAGTCTAAACAAGAGAAGTTGCAGAAGCTTGACTTGTCCCTCAAGCTCTAA 720 0.4278 MDTQTDKSQTQKEDQKHPHDSVPHLLLDLSLSSKDSGDDSKPELNLLNCLDTNLSENSSESSQGNELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYKAGAAVSLDFGQRYSSMASLPSHGLCNKPLGIQVHSMINKPSYQTPFFGLCRSHGQNGWLRQPLNSQPAIGKLSWGNFHGGTETESSLAGGISRLGKFSTRLVTEGFGGYWLDSITHLKSKQEKLQKLDLSLKL 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4156g00006 239 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 4 239 IPR044246 GO:0009788
Gabi4156g00006 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 99 IPR013087 -
Gabi4156g00006 239 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Gabi4156g00006 239 Gene3D Classic Zinc Finger 51 115 - -
Gabi4156g00006 239 SUPERFAMILY beta-beta-alpha zinc fingers 69 99 IPR036236 -
Gabi4156g00006 239 MobiDBLite consensus disorder prediction 1 23 - -
Gabi4156g00006 239 MobiDBLite consensus disorder prediction 1 44 - -
Gabi4156g00006 239 FunFam Zinc finger protein 2 50 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4156g00006 Gabi-Chr4156 39419 40668 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4156g00006 6 239 C2H2 Transcription Factor Family AT5G10970 42.857 1.91e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4156g00006 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4156g00006 - - gmx:102666245 310.071