Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4156g00001 ATGTCAGGTGACGAAGGTGGCGTCGTTGCGGCTGAGCCAGTAGCAGCCCCTGCTGCTGCTGCTGCTGGTATTCCAGGGGAGCCCATGGATATAATGACTGCCTTACAGCTTGTGCTAAAAAAATCTCTTGTTTATGGTGGTCTGGCACGAGGCCTTCATGAAGGTGCAAAAGTGATTGAGAAGCACGCTGCACAACTCTGTGTTCTAGCGGAAGATTGTGACCAACCTGACTATGTTAAACTCGTCAAGGCCCTTTGCGCTGAGCACAATGTTAGCCTGCTGACAGTCCCAAGTGCAAAGACCCTGGGTGAATGGGCTGGTTTGTGCAAGTATGATTCAGAAGGAAAAGCTAGGAAGGTAACTGGTTGCTCCTGTGTGGTTGTCAAGGATTTTGGGGAGGAGCATGAAGCCTATAATGTTGTTCTGCAGCATGTGAAATCTCAATGA 447 0.4944 MSGDEGGVVAAEPVAAPAAAAAGIPGEPMDIMTALQLVLKKSLVYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKYDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSQ 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4156g00001 148 SUPERFAMILY L30e-like 28 146 IPR029064 -
Gabi4156g00001 148 FunFam 40S ribosomal protein S12 15 148 - -
Gabi4156g00001 148 PRINTS Ribosomal protein S12E family signature 52 68 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gabi4156g00001 148 PRINTS Ribosomal protein S12E family signature 93 114 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gabi4156g00001 148 PRINTS Ribosomal protein S12E family signature 118 131 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gabi4156g00001 148 PRINTS Ribosomal protein S12E family signature 38 51 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gabi4156g00001 148 ProSitePatterns Ribosomal protein S12e signature. 34 52 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gabi4156g00001 148 PANTHER 40S RIBOSOMAL PROTEIN S12 25 147 - -
Gabi4156g00001 148 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 34 127 IPR004038 -
Gabi4156g00001 148 Gene3D - 17 148 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4156g00001 Gabi-Chr4156 6220 7897 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4156g00001 24 148 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 72.000 5.35e-64 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4156g00001 K02951 - gmx:100786733 255.758