Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4152g00064 ATGGTAGCCCAACAGCCCCAACTTCAGGTTCAGGTTCAGACTCAGCAACCTACACCCTCTGCCCAAGATGAGGCCTTGAAGAGAAACACGGATTGCGTCTACTTTCTTGCGTCTCCTTTGACATGCAAAAAGGGAAATGAATGCGAGTACCGCCATAGTGAGTACGCTCGGGTAAATCCTCGGGATTGCTGGTATTGGTTGAATGGTAATTGCTTGAATCCCAAATGTTCATTCCGTCATCCGCCTCTTGATGGCTTGATAGGAACACAGGCAACCACCCCTGGTGGACCATCTGTACCCCCGTCACAGATTGCAACAATGTCTGCAACACCAACACATGCACCTTATAATTCTAGTAAACAAGCTGTCCCCTGCATTTTCTTCCAAAAGGGGCTTTGCTTAAAAGGTGACAGATGTGCCTTCTTGCATGGACCAAGTCCTAACACTGGTAATAAAGTAACTACTCAAGTCCTCTTAAATAGTCCTTTTAAGAAGCCTTTTGGCAGCATTGAGAGGCATACACAGGAAAGGAAAACTTCCCAGGGAAATGTTGCAAGTTCAGTTGGAGGTCCTGAAACTAAATCTTCCCAAAAAGTTGAAACTGCTCCACAAAGAAATATGTTTGAATTGGAGAAGCATGTGCCACTACCACCTGCGGGATTTGATATTGAGGCTTCAAGATTTAAGATAACAAGCTCTCCACCAGTCACCAATGGGCCCACTGTAGCCCGGTCTAATCGTCTGCATCAAGCCCGTGTGCCAGATGATCATAGTTTCCATAGTGGGAAAGACAGTGATGAGTTTCTCAGAGAATCCTCTCCTGGGTTTGATGTTCTTGTAGCTGATGAACTTAGGAATTCTGATTACTACCACGGGGAAGATGAATTTGGTAAAGCAAGAGGTCAAGATGAAAGGACCTTAGACTCTCTGAATGAATATGATTTAGGACACTCTGCTGATTATAGTTTAGCTGCTGATATTGATCGAGAAAGATTTCGTGTACCCCAAGGTTATGACTCGTATGATCATATGCAAGAGCCATATGCTTGGGAGCAGCATAGAAAGGCGCCGGCCCATTTAGAAAGAAGGACTCACCGCAGGTCTGACAGCCCTGACAATGTTGAGGTCTCAGATCTGCGACATCGTTTATCCAAGCGCAAGAAGGTCAATGGTTTGAAATCTGTTGTCACTCATGATTATGCCCTTGAAAGCCATGGTGAGGAACAAAGTCAACGGTTCTTCTCTCGAAAGGATTCACCCCCGTTACCTATGAATGATAGCTCCCTCAATAATCGCTTCCGAGGCAGAATAAAACTTCCGGCAAATGGTGGTGATGATCATCTTGAGAGGGAGTCAGACAAAGGAAGAATTAGGAGCAGATTGTCATCTGGAAGGTTGCTGGCCCCTCACCAGGGAAGGATCCAAGATAGAGTAAGAGGAAGGTCGCAGGATGATGAGAGGAGAAACTTCAGGGATCGATCCATGGGGCGAGAACTAGTGGGAGGAAGAAGTGATTTTGCTGGGCCAAAAAGTCTTGCTGAACTTAAAACTGGGAGTAACACTGAGAATAAGGAGCAACAATCTCTGGGAAAGAGAAAGAGTTTAAGGGATCATCAACAATCTGAAGATGATTTTCTTTTCGAAGGTCCAAAACCTCTGAGTGAAATTCTGAAGGAGAAGAGAGGAGTTGGAGCTGGTGCAGCCTCCGAGAGTGGTAAATCATCTGACAATAAGAATAGAGAAATTACCCATAGCTCAGATCATACATCTGTCATAAACAAACAAAATGGAGCATTGTTTGAGACCAAGGAAAATGTCAAGAACCATTTGCTAATTAATGAAGAAGAATCCAAGCTTAAGGTCACTGATGCAGTTGGAAGAGAGATTGATAATGCTGATGTAACACATGGTCAATCATCCGAGGATGGAATGATTTACGATGAAGCCGGGGAGTATCAGGAGTTCGAAGGTGATGATCAGAGAGATGGGGACTATGATTATGAGCAAGTTGATGAGGGGGAGTATGAATATGAACAAGTTGATGAGGGTGAAAATCAAGAGCAAGAATACATAGATGATGAAGATGGGGACGACTTTGCTAAGAAGATTGGTGCTGTTCTTACGTAA 2127 0.4429 MVAQQPQLQVQVQTQQPTPSAQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCWYWLNGNCLNPKCSFRHPPLDGLIGTQATTPGGPSVPPSQIATMSATPTHAPYNSSKQAVPCIFFQKGLCLKGDRCAFLHGPSPNTGNKVTTQVLLNSPFKKPFGSIERHTQERKTSQGNVASSVGGPETKSSQKVETAPQRNMFELEKHVPLPPAGFDIEASRFKITSSPPVTNGPTVARSNRLHQARVPDDHSFHSGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKARGQDERTLDSLNEYDLGHSADYSLAADIDRERFRVPQGYDSYDHMQEPYAWEQHRKAPAHLERRTHRRSDSPDNVEVSDLRHRLSKRKKVNGLKSVVTHDYALESHGEEQSQRFFSRKDSPPLPMNDSSLNNRFRGRIKLPANGGDDHLERESDKGRIRSRLSSGRLLAPHQGRIQDRVRGRSQDDERRNFRDRSMGRELVGGRSDFAGPKSLAELKTGSNTENKEQQSLGKRKSLRDHQQSEDDFLFEGPKPLSEILKEKRGVGAGAASESGKSSDNKNREITHSSDHTSVINKQNGALFETKENVKNHLLINEEESKLKVTDAVGREIDNADVTHGQSSEDGMIYDEAGEYQEFEGDDQRDGDYDYEQVDEGEYEYEQVDEGENQEQEYIDDEDGDDFAKKIGAVLT 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4152g00064 708 MobiDBLite consensus disorder prediction 439 460 - -
Gabi4152g00064 708 ProSiteProfiles Zinc finger C3H1-type profile. 57 83 IPR000571 GO:0046872
Gabi4152g00064 708 FunFam Zinc finger CCCH domain-containing protein 17 20 83 - -
Gabi4152g00064 708 MobiDBLite consensus disorder prediction 179 201 - -
Gabi4152g00064 708 Pfam Zinc-finger containing family 27 82 IPR041686 -
Gabi4152g00064 708 ProSiteProfiles Zinc finger C3H1-type profile. 119 146 IPR000571 GO:0046872
Gabi4152g00064 708 MobiDBLite consensus disorder prediction 526 558 - -
Gabi4152g00064 708 MobiDBLite consensus disorder prediction 472 499 - -
Gabi4152g00064 708 MobiDBLite consensus disorder prediction 354 379 - -
Gabi4152g00064 708 ProSiteProfiles Zinc finger C3H1-type profile. 26 55 IPR000571 GO:0046872
Gabi4152g00064 708 Gene3D - 110 181 - -
Gabi4152g00064 708 Gene3D - 17 83 - -
Gabi4152g00064 708 MobiDBLite consensus disorder prediction 402 596 - -
Gabi4152g00064 708 MobiDBLite consensus disorder prediction 166 201 - -
Gabi4152g00064 708 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 23 706 - -
Gabi4152g00064 708 MobiDBLite consensus disorder prediction 250 270 - -
Gabi4152g00064 708 SMART c3hfinal6 59 82 IPR000571 GO:0046872
Gabi4152g00064 708 SMART c3hfinal6 27 54 IPR000571 GO:0046872
Gabi4152g00064 708 SMART c3hfinal6 119 145 IPR000571 GO:0046872
Gabi4152g00064 708 MobiDBLite consensus disorder prediction 1 23 - -
Gabi4152g00064 708 SUPERFAMILY CCCH zinc finger 120 144 IPR036855 GO:0046872
Gabi4152g00064 708 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 123 145 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4152g00064 Gabi-Chr4152 676015 679718 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi4152g00064 zf-CCCH_3 5.2e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4152g00064 - - gmx:100787836 1040.8