Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi4152g00047 | ATGGCATCGTCCCAAGTTGAAATCGCTTCATCTTCGCCATTAGGTTGCGTTTTAACGGACCATAATTGTCGTGATCCTTGCACTACACATGCTACTTTCCATAAAAACATCCTCAGAGACCACCTTAACACATGCAATGATTCTGCAGCACCAAACAACAACATTCAAAAACCAATGAGCAATGCTGATACTTGGGTCTCAAGAGTTGCCAAGAACAACCTTGGAAATCCAAGTTTCACAAGAAGACTTCACAACATGATTGATCAACAAGGCAGGGATCACAAAGATGATTTTTCATTGTCTGCATTGGTGAGCCCGAGGCACTCACGGATCATTGATCGATGGACTGCAAGAAAAGCTCGAGAAATGGTGTCAACGCTTGAGAATCATGAGGTTGAGGTGCTGAACAATTTTCCTTCAAGGTCATCTAGTTTTACTTCTAGGAGGGAAGTGTCACCTCCTCTTGATGGCACCTCTGAAAGTGAAATCTCAAACCTTGGTGCTTCTTCCCTTGTTCAGATATGGGAAAAGAGGCTCAACCAATCTAATTGCAATAAACCAAACGCACCAGCTTCCCCTGGGAGGATTAGTCCTAATCCAAGTTGCAATGAGAATGCATTTTCTGTGGAAGAACAATGCAGGGTCTCAGAAGAAGAAGGGGATTCCACTTATGAACCATCAGGTAATGAGGAATCATTCTCAGATTGGGAATCTGATAAAACAGGACCAAGTTATCAATCACATTCACCGCAAGTGCATCATAGTTCAGATGAGAAAGGAAGGGTTGCAGATATTATCAAGAGACTCAGTGTTACAAATCAAATGAGTGATGAAAATGATCATGAGATGTGTAGTAGTAGCGTGACTGGATCTCCATATAGAGAGCGTGACCGTGTTTCTACACCAAAACAACAAGAGCACAAGGCTTTTGCTCAGGTCATAAGTTCACCACGTATTAGGGGGCGCCAAGCATTCAATGATTTGATTGTGCAGTTTGAGAGTGATCGTCATAGAGAGCTCAACCATCTTGCAGAGAGAGGTGCAGTTTCCATGTTTTCACAAAGAGGCCGTATTCAGTCATTGCTTCGGCTTAGATTATTACAACGTGGGGTAGCAGCTTTTGATCAGTCCCGCCAGAAATCAGATCAAGGGAACACACAAGAAGAAGGATCACCAATTATGCAATTGAGGGAAAGATTTAGCACAGGAGATGAACATAGAACTTCATCCCTGGCAGAGGTATCCGATCCAAGAAGTCCTGGTAGGGAGATAATAGTAAGCAGCATCAAACAAATGGGTGACTTTCCTACCTCTATTCAGATCAGCAAAGACACTCGCTGCAAGACTATTTATGGCACTGACATTCACTGTAAAGAACCTATACAGAACCCAGAATCTCAAACTAGTGCAGATAACAAAAAAGAAGCTCATCCTCCAAGTTCAGATGTCACATTCCAAGGAACACTTTTTGAAGCTCAAAATGATGATCCAAAAGAAACAGTTGGAGCATGTTCATCCATGGCTGATTCAAATGCAAATGAGACGGCCTATGAGGTAGAGGCAAGTGAGCAGCAGTATGCTGCAAGCAGTTACAATGAAACAGAAGAGGAAGAGGCCAATGACCATTATTATAATGAAGCTAGTTATGACTGGATTAGTCCTATTTCTCGACCTAGGAGCTATTGGGAAGAACGAAGGCAAGAATGGTATAGGGAGATGCTTGACTTTGGTTCAGACAATGATGAGATACGTAAGCTTCTTGAAAGAAGAACAGTGTCAACTTTCCTTTCTAGTGACTTCCGTGAAAGGATGGATAGATTGATGAAGTCTCATATTGGAACACAAACACACCTAATCAATGGTCAATACGATGAGGGAGACCAAAAAGAGAGAATGGACCAGGTGATGGAATTTTTACAGGAACACTTGTGTTTTGGAGACAGTCCTCAAGATGGAAAAGGTAGTGCAGTGGAGAAAGAAGAAGAAGAAGAAGAAGAGGAGGAAGTGAAGGTAGAGGAGCAAGAAAAGGAAAGCATCATTAGTGGTTCGGATCATGAACTTGGTAATTATTTCAATCAATCATCATCACCAATGCATTCATCTTCCTCCTCAAAATGGAGTTATAGAGACATTGATGCTGGGGATGATTCTGATAGAGTTGCATCTATATCCTCATCATTACCTTCTCAATCTCAGTCTTTCTATAAAGATAGTAGGCAGTACTCTTCATCCACAAATCATCATTCAATTGAAATGGAATTCATATACGAATTGAGAGGACAAATGGTTCAACTTTTTCATGAGATGTCTGAGCTAAGGAAATCAATAAAGAGCTGCATGGACATGCAGATGCAGATGCAATTACAACAATCCAAGAACCAAGAGGTTCACAAGAAGTCCCATAAGAGGACACCAAAGAAAGGAAACTGCTGCATTTGCCATGAGAAGAAAGTAAACTCGGTTTTATACAGATGTGGGCACATGTGTGCATGTCTCAAGTGTGCCAATGAGTTGCAATGTAACAACGGAAAATGTCCAATATGTAGAGCACCAATAATAGATGTTGTCCGTGTATATGCTGACACAGAATCTTTCAAACACAGTCTCGCTGTAGAGGACTAA | 2622 | 0.415 | MASSQVEIASSSPLGCVLTDHNCRDPCTTHATFHKNILRDHLNTCNDSAAPNNNIQKPMSNADTWVSRVAKNNLGNPSFTRRLHNMIDQQGRDHKDDFSLSALVSPRHSRIIDRWTARKAREMVSTLENHEVEVLNNFPSRSSSFTSRREVSPPLDGTSESEISNLGASSLVQIWEKRLNQSNCNKPNAPASPGRISPNPSCNENAFSVEEQCRVSEEEGDSTYEPSGNEESFSDWESDKTGPSYQSHSPQVHHSSDEKGRVADIIKRLSVTNQMSDENDHEMCSSSVTGSPYRERDRVSTPKQQEHKAFAQVISSPRIRGRQAFNDLIVQFESDRHRELNHLAERGAVSMFSQRGRIQSLLRLRLLQRGVAAFDQSRQKSDQGNTQEEGSPIMQLRERFSTGDEHRTSSLAEVSDPRSPGREIIVSSIKQMGDFPTSIQISKDTRCKTIYGTDIHCKEPIQNPESQTSADNKKEAHPPSSDVTFQGTLFEAQNDDPKETVGACSSMADSNANETAYEVEASEQQYAASSYNETEEEEANDHYYNEASYDWISPISRPRSYWEERRQEWYREMLDFGSDNDEIRKLLERRTVSTFLSSDFRERMDRLMKSHIGTQTHLINGQYDEGDQKERMDQVMEFLQEHLCFGDSPQDGKGSAVEKEEEEEEEEEVKVEEQEKESIISGSDHELGNYFNQSSSPMHSSSSSKWSYRDIDAGDDSDRVASISSSLPSQSQSFYKDSRQYSSSTNHHSIEMEFIYELRGQMVQLFHEMSELRKSIKSCMDMQMQMQLQQSKNQEVHKKSHKRTPKKGNCCICHEKKVNSVLYRCGHMCACLKCANELQCNNGKCPICRAPIIDVVRVYADTESFKHSLAVED | 873 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi4152g00047 | 873 | MobiDBLite | consensus disorder prediction | 272 | 309 | - | - | |
| Gabi4152g00047 | 873 | MobiDBLite | consensus disorder prediction | 183 | 210 | - | - | |
| Gabi4152g00047 | 873 | MobiDBLite | consensus disorder prediction | 374 | 392 | - | - | |
| Gabi4152g00047 | 873 | MobiDBLite | consensus disorder prediction | 374 | 394 | - | - | |
| Gabi4152g00047 | 873 | SUPERFAMILY | RING/U-box | 793 | 856 | - | - | |
| Gabi4152g00047 | 873 | MobiDBLite | consensus disorder prediction | 719 | 741 | - | - | |
| Gabi4152g00047 | 873 | MobiDBLite | consensus disorder prediction | 685 | 708 | - | - | |
| Gabi4152g00047 | 873 | Coils | Coil | 655 | 679 | - | - | |
| Gabi4152g00047 | 873 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 784 | 860 | IPR013083 | - | |
| Gabi4152g00047 | 873 | MobiDBLite | consensus disorder prediction | 140 | 163 | - | - | |
| Gabi4152g00047 | 873 | ProSiteProfiles | Zinc finger RING-type profile. | 810 | 849 | IPR001841 | - | |
| Gabi4152g00047 | 873 | PANTHER | BNAC05G24000D PROTEIN | 1 | 861 | - | - | |
| Gabi4152g00047 | 873 | MobiDBLite | consensus disorder prediction | 458 | 482 | - | - | |
| Gabi4152g00047 | 873 | MobiDBLite | consensus disorder prediction | 183 | 260 | - | - | |
| Gabi4152g00047 | 873 | MobiDBLite | consensus disorder prediction | 658 | 672 | - | - | |
| Gabi4152g00047 | 873 | Pfam | Zinc finger, C3HC4 type (RING finger) | 807 | 854 | - | - | |
| Gabi4152g00047 | 873 | CDD | mRING-HC-C3HC5_NEU1 | 807 | 859 | - | - | |
| Gabi4152g00047 | 873 | MobiDBLite | consensus disorder prediction | 644 | 741 | - | - | |
| Gabi4152g00047 | 873 | MobiDBLite | consensus disorder prediction | 272 | 294 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi4152g00047 | Gabi-Chr4152 | 511696 | 515532 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi4152g00047 | 810 | 858 | C3H Transcription Factor Family | AT3G06140 | 38.776 | 5.24e-07 | 50.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi4152g00047 | - | - | aprc:113855868 | 901.353 |