Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4152g00044 ATGGCAGCAATAATGAGGATTTCAAAACTTGCAGTGGTTATGCTCCTCTTGTGCTTTTTTTCTATGTTACTAGTGCTTGGCCAGAACAAACTAGACAGTGACACAACTTTGAGAGTGCTTTTGGAAGTGAAGAAGTCTTTTGTGCAAGACCCACATAATGTTTTGAGTGATTGGTCAGAGAACAACATAGACTACTGTAGTTGGAGAGGGGTGTCATGTGGATTGAACTCAAACTCAATCTCAAACACTTTGGATGATGACTCGGTGCAAGTGGTGGGCCTTAACCTTTCTGACTCGTCACTCACCGGGTCAATATCACCTTCACTCGGTCAATTGCAAAACCTGCTCCACCTTGATCTCTCATCCAACAACCTCAATGGTCCCATTCCACCTAATCTCTCTAATCTCATTTCATTGGAATCTTTGCTTCTCTTCTCTAACAAACTCACTGGTCACATTCCCACTGAGCTTGGCTCGCTCTCGAGTCTCCGAGTCATGCGACTCGGTGACAATGCACTAACGGGTATGATTCCCGCGTCTCTTGGAAACCTGCTTAACCTTGTCAACCTTGGTTTGGCTTCCTGTGGACTCGCTGGGTCGATTCCTCCTCAACTCGGTCAACTCAGTCTCTTGGAGAATCTGATCCTGCAGGACAACGAGTTGATGGGACCGATTCCGACCGAGTTGGGGAACTGCTCAAGCCTCACCATTTTCACTGCTGCTAACAACAAACTCAATGGCTCAATTCCTAGCGAACTGGGTCGACTCCAGAATCTACAAATTCTCAACCTTGCCAACAACAATCTATCAGGGGAGATTCCGAGTCAACTCGGTGATATGAGTGAACTCGTTTACCTGAATTTCATGGGGAACCAACTTGAGGGTGGTATTCCACCGTCTCTGGCTCAACTGGGTAATCTTCAAAATCTGGACTTGTCCATGAACAAGCTCAGTGGGGGAATTCCAGAGGAGTTGGGGAACATGGGTCAACTACTTTACATGGTTCTGTCTGGTAACAACCTTAATGGTGTCATCCCAAGAACCATATGTTCCAATACAACAAGTTTGGAACACTTGATGATATCACAAAGTGGAATTCATGGTGAGATCCCAGCTGAGCTGAATCAGTGTCAATCACTGAAACAACTTGATTTGTCCAACAATTCAATCAACGGATCCATACCTCTTGAGCTTTATGGTTTGGTGGGGTTAACTGATCTCTTGCTTAACAACAACAGTTTGGTTGGTTCCATCTCTCCCTTCATAGGGAACCTCAGTAACTTGCAGACACTTGCTTTGTTTCACAACAGTTTGCAGGGTGTTCTGCCCAGAGAGATTGGAATGCTTGGCAAGTTGGAAATTTTATATCTTTATGATAATCAACTATCAGGGTTTATACCTATGGAGATTGGTAATTGTTCTAGCTTGCAAATGATTGATTTCTTTGGGAACCGTTTCAGTGGGGATATTCCTATCACTATTGGAAGGCTGAAAGAGTTGAATTTCCTTCACCTTAGGCAGAATGAGCTTGTGGGTGACATTCCTGCCACATTGGGTAACTGTCAGAAATTGAACATCCTGGATTTGGCTGATAATCAGCTCTCAGGTGCAATTCCTGCAACATTTGGATTGCTCAAGGCATTGCAGCAGCTCATGCTCTACAACAATTCTCTTGAAGGTAACCTTCCTCACCAGCTGATAAATGTAGCAAATTTGACCAGAGTGAATCTTTCAAAGAACAGATTGAATGGTACTGTAGCTGTACTGTGTAGCTCTAGATCGTTTCTTTCTTTTGATGTTACCAACAATGAGTTTGACAGCGAAATTCCGCCCCAACTGGGAAACTCCCCCTCCCTTGAGAGGCTGAGATTAGGTGACAATAAATTTTCTGGTGAAATTCCAAGGACATTGGCAAAAATCCGTGACCTGTCATTGCTAGATCTCTCAGGAAATTCACTCACTGGACCAATACCAGCTGAGCTTTCTTTGTGCAATAAACTTACTTACATTGATTTAGACAGAAATCTTCTTTCTGGACAAATTCCATCATGGCTTGGAAATTTGCCTCTGTTGGGAGAGCTTAAGCTCTCTTTCAATAATTTCTCCGGACCTCTTCCATTTGGCCTATTCAAATGTTCCAAGTTGCTAGTTCTCTCTCTAAATGACAACTCTCTCAATGGAAGTCTACCAGCTGGTATTGGTGATCTTGCATACCTTAATGTCCTTAGGCTTGATCATAATAAGTTCTCTGGACCAGTCCCTCCTGAGATAGGTAAGTTGAGCAAGCTTTATGAGCTCCAGCTCTCCAGAAATAGCTTTAATGGTGAGATGCCAACTGAGATTGGTAAACTTCAAAATCTCCAAATCATTTTAGACCTTAGTTACAATAATCTCTCAGGTCATATCCCACCTTCTCTTGGGACTTTGTCAAAATTAGAAGTACTTGACCTTTCCCACAATCAACTCACGGGAGAAGTCCCTCCACAAGTTGGTGAAATGAGCAGCTTGGGAAAGCTTGATCTCTCATACAACAACCTTCAAGGAAAATTGGACAAGCAGTTCTCCCGCTGGAGAAATGAGGCATTTGAAGGGAACCTACATCTTTGTGGAAGCCCTCTTAAGCGCTGCTACAATGATGCTGCTACTGGCAGTGAGCACTCAGGCCTAAGTGAATCATCAACAGTGATAATCTCTGCCATTTCAACTTTAGCTGCAATTGCATTATTCGTATTTGCAGTGAGAATCTTCTTCAAAAACAAGCAAGAGTTTTTCAGGAAAGGCAGTGAAATGAATTATGTTTACTCTTCTTCTTCATCACAAGCACAGAGAAGACCGCTTTTCCAACTAAATGCTGCTGGAAAGAGAGACTTCAGGTGGGAAGATATCATGGATGCCACCAACAATCTAAGTGATGACTTCATGATTGGTTCAGGAGGTTCAGGGACGATCTACAAAGCTGAATTGGCCACTGGAGAGACAGTGGCTGTCAAGAAGATTTCTTCAAAAGATGAATTTCTGTTAAACAGAAGCTTCATAAGAGAAGTGAAGACTCTAGGGAGGATTAGGCATAGACATCTGGTGAAGCTAATAGGTTATTGTAGCAATAGAAACAAAGGAGCAGGTTGGAATCTGTTGATATATGAGTACATGGAGAATGGAAGTGTATGGGATTGGCTTCATGGGAAACCAACCAAGGATGTCAAAGTAAAGAGGAGCCTTGATTGGGAGACAAGGTTCAAAATTGCTGTTGGATTAGCTCAAGGAGTGGAGTACATCCATCACGATTGTGTGCCAAAGATCATTCACAGGGACATCAAACCCAGCAACATATTGCTAGATTCCAAAATGGAGGCACACTTGGGAGATTTTGGACTGGCAAAAGCACTCATTGAGAATTATGACTCCAATACTGAGTCTAGTTCTTGGTTTGCTGGGTCCTATGGCTACATGGCTCCAGAATATGCATACTCCCTACAGGCAACAGAAAAAAGTGATGTTTACAGCATGGGAATTGTGCTTATGGAACTTGTTAGTGGTAAAATGCCAACAAATGAAATGTTTGGAGCAGAGATGGGCATGGTGAGATGGGTGGAGTCGCACATTGATATGCATGGCTCTGCCAGAGAGGAATTGATAGATCCTGAGCTAAAACCTCTTTTACATGGACAAGAGTTGGCTGCATTCCAAGTGCTTGAGATAGCCTTACAGTGTACAAAAACTACACCACAGGAGAGGCCATCTTCAAGGAAAGTATGCGATCTTCTCCTCCATGTATTCAACAACAGAATGGTGGACTTCCAGAAGATGAATTTGGCTCATGGCAAGTGA 3828 0.431 MAAIMRISKLAVVMLLLCFFSMLLVLGQNKLDSDTTLRVLLEVKKSFVQDPHNVLSDWSENNIDYCSWRGVSCGLNSNSISNTLDDDSVQVVGLNLSDSSLTGSISPSLGQLQNLLHLDLSSNNLNGPIPPNLSNLISLESLLLFSNKLTGHIPTELGSLSSLRVMRLGDNALTGMIPASLGNLLNLVNLGLASCGLAGSIPPQLGQLSLLENLILQDNELMGPIPTELGNCSSLTIFTAANNKLNGSIPSELGRLQNLQILNLANNNLSGEIPSQLGDMSELVYLNFMGNQLEGGIPPSLAQLGNLQNLDLSMNKLSGGIPEELGNMGQLLYMVLSGNNLNGVIPRTICSNTTSLEHLMISQSGIHGEIPAELNQCQSLKQLDLSNNSINGSIPLELYGLVGLTDLLLNNNSLVGSISPFIGNLSNLQTLALFHNSLQGVLPREIGMLGKLEILYLYDNQLSGFIPMEIGNCSSLQMIDFFGNRFSGDIPITIGRLKELNFLHLRQNELVGDIPATLGNCQKLNILDLADNQLSGAIPATFGLLKALQQLMLYNNSLEGNLPHQLINVANLTRVNLSKNRLNGTVAVLCSSRSFLSFDVTNNEFDSEIPPQLGNSPSLERLRLGDNKFSGEIPRTLAKIRDLSLLDLSGNSLTGPIPAELSLCNKLTYIDLDRNLLSGQIPSWLGNLPLLGELKLSFNNFSGPLPFGLFKCSKLLVLSLNDNSLNGSLPAGIGDLAYLNVLRLDHNKFSGPVPPEIGKLSKLYELQLSRNSFNGEMPTEIGKLQNLQIILDLSYNNLSGHIPPSLGTLSKLEVLDLSHNQLTGEVPPQVGEMSSLGKLDLSYNNLQGKLDKQFSRWRNEAFEGNLHLCGSPLKRCYNDAATGSEHSGLSESSTVIISAISTLAAIALFVFAVRIFFKNKQEFFRKGSEMNYVYSSSSSQAQRRPLFQLNAAGKRDFRWEDIMDATNNLSDDFMIGSGGSGTIYKAELATGETVAVKKISSKDEFLLNRSFIREVKTLGRIRHRHLVKLIGYCSNRNKGAGWNLLIYEYMENGSVWDWLHGKPTKDVKVKRSLDWETRFKIAVGLAQGVEYIHHDCVPKIIHRDIKPSNILLDSKMEAHLGDFGLAKALIENYDSNTESSSWFAGSYGYMAPEYAYSLQATEKSDVYSMGIVLMELVSGKMPTNEMFGAEMGMVRWVESHIDMHGSAREELIDPELKPLLHGQELAAFQVLEIALQCTKTTPQERPSSRKVCDLLLHVFNNRMVDFQKMNLAHGK 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4152g00044 1275 Gene3D Ribonuclease Inhibitor 209 283 IPR032675 -
Gabi4152g00044 1275 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 930 1049 - -
Gabi4152g00044 1275 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 33 204 - -
Gabi4152g00044 1275 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 491 587 - -
Gabi4152g00044 1275 Gene3D Phosphorylase Kinase; domain 1 929 1049 - -
Gabi4152g00044 1275 Gene3D Ribonuclease Inhibitor 287 395 IPR032675 -
Gabi4152g00044 1275 Gene3D Ribonuclease Inhibitor 491 587 IPR032675 -
Gabi4152g00044 1275 PANTHER UNNAMED PRODUCT 543 1186 - -
Gabi4152g00044 1275 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 297 396 - -
Gabi4152g00044 1275 ProSiteProfiles Protein kinase domain profile. 969 1260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4152g00044 1275 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 210 281 - -
Gabi4152g00044 1275 FunFam Leucine-rich repeat receptor-like protein kinase 1050 1272 - -
Gabi4152g00044 1275 Gene3D Ribonuclease Inhibitor 588 884 IPR032675 -
Gabi4152g00044 1275 ProSitePatterns Protein kinases ATP-binding region signature. 975 998 IPR017441 GO:0005524
Gabi4152g00044 1275 Pfam Protein kinase domain 974 1252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4152g00044 1275 Gene3D Transferase(Phosphotransferase) domain 1 1050 1271 - -
Gabi4152g00044 1275 SUPERFAMILY L domain-like 350 678 - -
Gabi4152g00044 1275 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1100 1112 IPR008271 GO:0004672|GO:0006468
Gabi4152g00044 1275 PRINTS Leucine-rich repeat signature 380 393 - -
Gabi4152g00044 1275 PRINTS Leucine-rich repeat signature 809 822 - -
Gabi4152g00044 1275 SUPERFAMILY L domain-like 594 873 - -
Gabi4152g00044 1275 SUPERFAMILY L domain-like 63 347 - -
Gabi4152g00044 1275 SMART LRR_typ_2 425 448 IPR003591 -
Gabi4152g00044 1275 SMART LRR_typ_2 760 784 IPR003591 -
Gabi4152g00044 1275 SMART LRR_typ_2 809 833 IPR003591 -
Gabi4152g00044 1275 SMART LRR_typ_2 497 521 IPR003591 -
Gabi4152g00044 1275 SMART LRR_typ_2 208 232 IPR003591 -
Gabi4152g00044 1275 SMART LRR_typ_2 449 473 IPR003591 -
Gabi4152g00044 1275 SMART LRR_typ_2 545 569 IPR003591 -
Gabi4152g00044 1275 SMART LRR_typ_2 688 712 IPR003591 -
Gabi4152g00044 1275 SMART LRR_typ_2 256 280 IPR003591 -
Gabi4152g00044 1275 SMART LRR_typ_2 304 328 IPR003591 -
Gabi4152g00044 1275 SMART LRR_typ_2 377 401 IPR003591 -
Gabi4152g00044 1275 SMART LRR_typ_2 112 136 IPR003591 -
Gabi4152g00044 1275 SMART LRR_typ_2 160 183 IPR003591 -
Gabi4152g00044 1275 SUPERFAMILY Protein kinase-like (PK-like) 953 1255 IPR011009 -
Gabi4152g00044 1275 Gene3D Ribonuclease Inhibitor 34 203 IPR032675 -
Gabi4152g00044 1275 Gene3D Ribonuclease Inhibitor 396 490 IPR032675 -
Gabi4152g00044 1275 SMART serkin_6 969 1260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4152g00044 1275 FunFam Uncharacterized protein 397 490 - -
Gabi4152g00044 1275 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 588 880 - -
Gabi4152g00044 1275 Pfam Leucine rich repeat N-terminal domain 38 73 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4152g00044 Gabi-Chr4152 495920 499854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4152g00044 195 827 Receptor kinase-like Gene Family AT1G17750 34.551 5.69e-92 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi4152g00044 Pkinase 8.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4152g00044 - - gmx:100801889 2079.68