Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4152g00030 ATGGCGGGTTCAAACATGACAGTTCTAATCCAAAACGAAAGGCATCCATGCTCCTCGGAGCTAGTTGAGTCTTTCTTGGTTCAAAGTTCTGAACCTTTCTTTCAAGGTTCAGAATCCCTGGTTAATGTTGTGAATGTTAGTGGGAGCAGAGTCACAGATAGGTCCTTCTTCAAAGCGGTTGAGAAAGAAGAGAAGGGTGATGATGAGGACTACGAGGCATGCTTCCATCAACCCGGTAAGAAAAGGAGGCTAACAAGCGAACAAGTTCAGTTCCTTGAAAGAAACTTTGAGGTAGAAAACAAGCTTGAACCCGAAAGGAAGGTCCAACTTGCAAAGGAGCTTGGCTTGCAGCCTAGGCAAGTGGCCATATGGTTCCAAAACCGGAGGGCAAGGTTCAAAACCAAACAACTAGAAAAAGACTATGCCACATTGAAAGCTAGTTATGACATACTCAAAGGTGACTATGACAATATTTTTCAAGAAAGGGAGAAGTTAAAAGAAGAGGTTAATTCTCTCAAGAACAGAATGATTGCAAGAGAGAAAAAGGAACAGAATTTAGATGTTAAGTCCTGTTGTGGTGCTGTCAAGTCAAAGCATAAAGAGGATATGGATTTAATCTTAAATGCAGCTTCTGAAAATGGGTTCAAAGTGCCACTTCCTGTTATGGTCATGTGCAAACTTGAAGATGCCAATTCAGCTAAAAGTGATGTGCATGATTCGGAACAAGACCAGTCTGATTTCTCACAAGATGAACAAGACATTCAAAGGGAAAACCTCTTCACCGTGCCATCCTTACCAAAGGACGAAGATGGCTGTTATGATGAACCACCTGAAAATTGTTGCAGTTTTCGGTTTCCAATTGAAGATCAAACCTTCTGTTTTTGGTCTTACTGA 894 0.4139 MAGSNMTVLIQNERHPCSSELVESFLVQSSEPFFQGSESLVNVVNVSGSRVTDRSFFKAVEKEEKGDDEDYEACFHQPGKKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYATLKASYDILKGDYDNIFQEREKLKEEVNSLKNRMIAREKKEQNLDVKSCCGAVKSKHKEDMDLILNAASENGFKVPLPVMVMCKLEDANSAKSDVHDSEQDQSDFSQDEQDIQRENLFTVPSLPKDEDGCYDEPPENCCSFRFPIEDQTFCFWSY 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4152g00030 297 ProSitePatterns 'Homeobox' domain signature. 110 133 IPR017970 GO:0000981|GO:0006355
Gabi4152g00030 297 Coils Coil 148 182 - -
Gabi4152g00030 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 57 240 IPR045224 GO:0003700
Gabi4152g00030 297 Pfam Homeodomain 80 133 IPR001356 GO:0003677
Gabi4152g00030 297 Gene3D - 73 142 - -
Gabi4152g00030 297 CDD homeodomain 78 136 IPR001356 GO:0003677
Gabi4152g00030 297 PRINTS Lambda-repressor HTH signature 115 131 IPR000047 GO:0003677
Gabi4152g00030 297 PRINTS Lambda-repressor HTH signature 106 115 IPR000047 GO:0003677
Gabi4152g00030 297 Pfam Homeobox associated leucine zipper 135 176 IPR003106 GO:0006355|GO:0043565
Gabi4152g00030 297 FunFam Homeobox-leucine zipper protein HAT5 73 137 - -
Gabi4152g00030 297 SUPERFAMILY Homeodomain-like 72 137 IPR009057 -
Gabi4152g00030 297 SMART HOX_1 77 139 IPR001356 GO:0003677
Gabi4152g00030 297 ProSiteProfiles 'Homeobox' domain profile. 75 135 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4152g00030 Gabi-Chr4152 273250 275028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4152g00030 16 180 Homeobox Transcription Factor Family AT3G01470 48.503 2.66e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi4152g00030 Homeodomain 3.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4152g00030 - K09338 gmx:100804328 379.407