Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4152g00023 ATGGGGTTGGGTGCTGAGAATGGTAAGGTGGTGGAGTCTTTGGATGTGAGTAAATCAAAGTGGAGGAAGAAGAAGAAGAAAGAGGATAGGGTAGTGGAAGAGGAAGAGACTGGGTGTTGGCTTAGGCTGAGGTTCATTGGCAGCTGCATTTCTTCGAGATCCAAGGTTGATAGCTCAGTTAGCGGCACCAGCACTAATTATGCTGAAAGTAAATCAACTAATGATACAAGTAGAGACCAACCAACAGTTCCAATAGTCTCTTCGACTACCACAAGTAATACTGAAAGCAATTCATCCACTTCCAAACTTGAAGAGGAGCTTAAAGTTGCTTCCAGGCTGCGAAAATTCTCTTTCAATGATCTTAAGTTGGCAACAAGAAATTTTCGGCCAGAGAGTCTTCTTGGTGAAGGTGGTTTTGGTTGTGTGTTCAAGGGATGGATTGAAGAAAATGGAACAGCACCAGTGAAGCCTGGCACAGGGCTTACTGTTGCTGTTAAAACCCTCAACCACGATGGGCTCCAGGGTCATAAAGAATGGCTGGCTGAAGTAAATTTCCTTGGTGATCTAGTTCATCCAAACCTTGTTAAACTTATAGGTTACTGCATTGAAGATGATCAAAGGTTGCTAGTATATGAATTCATGCCTCGGGGTAGCCTGGAAAACCACTTGTTTAGGAGATCCCTGCCTCTTCCGTGGTCCATTAGGATGAAAATTGCACTAGGAGCCGCAAAGGGTCTTGCTTTTCTTCATGAGGAAGCTGAACGACCTGTAATATATAGGGATTTCAAAACTTCCAATATACTATTGGATGCAGACTACAATGCCAAGCTCTCAGACTTTGGACTTGCAAAAGATGGTCCAGAGGGTGATAAAACCCATGTGTCTACTCGAGTGATGGGAACTTATGGTTATGCAGCGCCAGAATATGTCATGACGGGACATCTTACATCAAGAAGTGATGTGTATAGTTTTGGAGTGGTACTACTTGAGATGTTGACCGGCAGAAGATCTATGGACAAAAACCGACCCAATGGTGAACACAACCTTGTGGAATGGGCTAGACCACATCTAGGGGAGAGAAGAAGGTTCTACAGATTGATAGACCCTCGCTTGGAAGGTCACTTTTCTGTAAAAGGAGCTCAGAAAGCTGCTCATCTGGCTGCTCACTGCCTTAGCAGAGATCCAAAAGCAAGACCCCTCATGAGTGAAGTTGTAGAAGCTTTAAAGCCTCTCCCAAACCTGAAGGACATGGCTAGTTCATCATATTATTTCCAAACAATGCAAGGTGAACGTTTTAGTGCAAGCCCAAATACTAGAAATGGGAGAACACAAGGAGCATTGCTCACCAGGAATGGACAGCAGCAAAGGAGCCTTTCAATTTCACATGGTACTCATGCATCTCCATTTCACCATCAGTATCCCCAACAATCACCAAAACCCAATGGCAAGGCATAG 1455 0.4419 MGLGAENGKVVESLDVSKSKWRKKKKKEDRVVEEEETGCWLRLRFIGSCISSRSKVDSSVSGTSTNYAESKSTNDTSRDQPTVPIVSSTTTSNTESNSSTSKLEEELKVASRLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSVKGAQKAAHLAAHCLSRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQTMQGERFSASPNTRNGRTQGALLTRNGQQQRSLSISHGTHASPFHHQYPQQSPKPNGKA 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4152g00023 484 Gene3D Transferase(Phosphotransferase) domain 1 214 428 - -
Gabi4152g00023 484 FunFam Serine/threonine-protein kinase BIK1 95 213 - -
Gabi4152g00023 484 SUPERFAMILY Protein kinase-like (PK-like) 106 408 IPR011009 -
Gabi4152g00023 484 FunFam Probable serine/threonine-protein kinase PBL8 214 428 - -
Gabi4152g00023 484 MobiDBLite consensus disorder prediction 449 484 - -
Gabi4152g00023 484 MobiDBLite consensus disorder prediction 54 100 - -
Gabi4152g00023 484 Gene3D Phosphorylase Kinase; domain 1 87 213 - -
Gabi4152g00023 484 PANTHER OS01G0588500 PROTEIN-RELATED 91 411 - -
Gabi4152g00023 484 Pfam Protein tyrosine and serine/threonine kinase 132 408 IPR001245 GO:0004672|GO:0006468
Gabi4152g00023 484 ProSitePatterns Protein kinases ATP-binding region signature. 134 166 IPR017441 GO:0005524
Gabi4152g00023 484 CDD STKc_IRAK 134 411 - -
Gabi4152g00023 484 ProSiteProfiles Protein kinase domain profile. 128 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4152g00023 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Gabi4152g00023 484 MobiDBLite consensus disorder prediction 54 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4152g00023 Gabi-Chr4152 196264 200162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4152g00023 75 408 Glycoside Hydrolase AT3G07070 53.846 8.20e-118 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi4152g00023 PK_Tyr_Ser-Thr 5.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4152g00023 - - gmx:100807510 861.677