Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4152g00018 ATGGAGCTTGCCACTGTGAAGTCTGAATTGAACCCAAGAAGTCACCGGTTACTCATGATAGATGGTGAGACTAATGGCACTAAGTGTGTCAAAAGGCGGCGAAGAGATTCATCTGTAGCACTGTTAGTGGGCAATGAACAACAAGGTGAACAAACAGAAGAAAAGCAACCATTAGGTGGCCAATCAACCACCCCCACAGTGAAAAGAAGCTCAAGGTTCAGGGGTGTTAGCAGACACAGGTGGACTGGAAGGTTTGAAGCCCATCTATGGGATAAAGGGACCTGGAATCCAACTCAGAAGAAGAAAGGAAAGCAAGTATATTTGGGAGCTTATAATGATGAAGAAGCTGCTGCTAGAGCTTATGATTTGGCTGCACTCAAGTACTGGGGAACTTCAACTTTCACAAATTTCCCTGTACCTGATTATGAGAAGGAACTTGAGATAATGAAAACTGTAACCAAAGAAGAATATCTAGCTTCATTGAGAAGGAGGAGCAGTGGTTTTTCTAGAGGTGTATCAAAGTATAGAGGAGTAGCAAGGCACCATCACAATGGAAGATGGGAAGCAAGGATTGGGAGAGTGTTCGGCAACAAGTACCTCTACCTTGGGACTTACAGTACACAAGAAGAGGCAGCTCGCGCATATGATATTGCAGCAATAGAATATAGAGGCATAAATGCAGTGACAAACTTTGACTTGAGCACCTACATCAGATGGCTAAGACCAGGAGCACAATCTACTACTTCTCAAGAGCAAAAGCCAGGCACAGACCCTCAACCCTATGCAAACTCTAACTCCATCCAAACCAGAGGAAACACTGATGTAACCGACTCCAACATCCAGCCATTCCCCACAGGTGAATTGGACAGTACCAAGAAGCAAGACCTTTTCAACCACATGGCCCCTTTAAGTCCTTGCAATAAGTCATCTTCCCCAACAGCATTAGGACTTCTCCTAAAATCCTCAGTGTTCAGAGAACTGATGCAGAGAAATCTGAATTCTTCTAATGAAGAAGCTGAAGAAGTTGAATTGAAATACCCTCAAGAGGGCAGTGATGGGATTGGAGGGATATTTGATATTGATGTCAGCAGTAACTCTTACTTGTGCCCTTCCAATATCAACAAATTACCTAACTTGGAGTCACCAGAAGAGAGGACATTGCCTGTGTATCATAGAACTGTGCAATCCCTATGGAATGGTGATTTCAACATTTCTAACAGATAA 1224 0.4338 MELATVKSELNPRSHRLLMIDGETNGTKCVKRRRRDSSVALLVGNEQQGEQTEEKQPLGGQSTTPTVKRSSRFRGVSRHRWTGRFEAHLWDKGTWNPTQKKKGKQVYLGAYNDEEAAARAYDLAALKYWGTSTFTNFPVPDYEKELEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGAQSTTSQEQKPGTDPQPYANSNSIQTRGNTDVTDSNIQPFPTGELDSTKKQDLFNHMAPLSPCNKSSSPTALGLLLKSSVFRELMQRNLNSSNEEAEEVELKYPQEGSDGIGGIFDIDVSSNSYLCPSNINKLPNLESPEERTLPVYHRTVQSLWNGDFNISNR 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4152g00018 407 SMART rav1_2 174 238 IPR001471 GO:0003700|GO:0006355
Gabi4152g00018 407 SMART rav1_2 72 144 IPR001471 GO:0003700|GO:0006355
Gabi4152g00018 407 MobiDBLite consensus disorder prediction 42 71 - -
Gabi4152g00018 407 Gene3D AP2/ERF domain 71 139 IPR036955 GO:0003700|GO:0006355
Gabi4152g00018 407 Gene3D AP2/ERF domain 173 234 IPR036955 GO:0003700|GO:0006355
Gabi4152g00018 407 ProSiteProfiles AP2/ERF domain profile. 72 138 IPR001471 GO:0003700|GO:0006355
Gabi4152g00018 407 MobiDBLite consensus disorder prediction 245 290 - -
Gabi4152g00018 407 MobiDBLite consensus disorder prediction 245 288 - -
Gabi4152g00018 407 CDD AP2 173 234 IPR001471 GO:0003700|GO:0006355
Gabi4152g00018 407 SUPERFAMILY DNA-binding domain 71 139 IPR016177 GO:0003677
Gabi4152g00018 407 ProSiteProfiles AP2/ERF domain profile. 174 232 IPR001471 GO:0003700|GO:0006355
Gabi4152g00018 407 FunFam AP2-like ethylene-responsive transcription factor 71 140 - -
Gabi4152g00018 407 Pfam AP2 domain 173 224 IPR001471 GO:0003700|GO:0006355
Gabi4152g00018 407 Pfam AP2 domain 71 130 IPR001471 GO:0003700|GO:0006355
Gabi4152g00018 407 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 49 302 - -
Gabi4152g00018 407 SUPERFAMILY DNA-binding domain 173 234 IPR016177 GO:0003677
Gabi4152g00018 407 Coils Coil 325 345 - -
Gabi4152g00018 407 MobiDBLite consensus disorder prediction 42 74 - -
Gabi4152g00018 407 PRINTS Ethylene responsive element binding protein signature 214 234 IPR001471 GO:0003700|GO:0006355
Gabi4152g00018 407 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Gabi4152g00018 407 FunFam AP2-like ethylene-responsive transcription factor 173 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4152g00018 Gabi-Chr4152 152159 154360 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4152g00018 37 236 AP2-EREBP Transcription Factor Family AT5G57390 60.000 2.89e-84 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gabi4152g00018 AP2 5.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4152g00018 - - gmx:100799621 667.922