Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4152g00017 ATGAATACCTATCAAGTTCACACGTTCCCCACTCCATTTCGCGTTCTGACATATCCATCCACAAAGCAACCAAACATGCATCTCTTGCTCTTGCTTCATGCCAACACTAACACCACCCTTTGTTCCTCACTCACCGATGACTCCTTTTCCATCCCAAAACCAACACAGTTGGGTTACAGTGCTCCAGGGGAACTGTTCGGACTGGATGAGGAATTTAAGCCAAGAGTGTCCAGCAAAGCTAACTCTCATACACCCGAACCAAGGTCCTGGTTTGGTCCAAATGGACAGTATATCAGAGAGTTACCATGTCCAAGTTGCCGGGGAAGGGGTTATACTCCTTGTACAGAGTGTGGAATTGAAAGATCAAGATCAGACTGTCCAATATGTAATGGAAAGAGTCTCAATGCTAAAACTGGTCTATTTAGCAACCGAATGAAGATTATCCACCAGGATCCCATGCTTCAGGCTCAGAGAGTGGCTGCTATTAAGAAAGCCAAGGGAACTGTTGCAGCAAGAAAGCAGACCTCCAAAGCAATGAAAGCTTACTTTAGTGATCCAATAAACCGTCAGAAAAGGAGCATGGCCATGAAGGGAGTGAAATTCTACTGCCAAAACTGTGGACGGGAAGGGCATAGGAGACACTACTGTCCAGAACTCAAGGATAGTTTGATTGATCGCAGGTTTGCATGTAGGCTATGTGGGGAAAAAGGCCACAACAGAAGAACGTGTAGAAAGTTAAGGATAAGCCATAGTAATGGGAGAGTTATAAAACACCATCAGTGTAAAATATGTCACCAATATGGCCATAACAGCAGGACATGCCCTCAAGTTGTTTCTAATAAAATAAGGGACATGGCCTCTCGAAGATCATACAAGTGTCGGTTGTGCCATAGAGAGGGACACAATATTAGGACATGCCCTAGTAGAACAGTTGTTACTGAACATCCTGAAGATTAA 957 0.442 MNTYQVHTFPTPFRVLTYPSTKQPNMHLLLLLHANTNTTLCSSLTDDSFSIPKPTQLGYSAPGELFGLDEEFKPRVSSKANSHTPEPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRSDCPICNGKSLNAKTGLFSNRMKIIHQDPMLQAQRVAAIKKAKGTVAARKQTSKAMKAYFSDPINRQKRSMAMKGVKFYCQNCGREGHRRHYCPELKDSLIDRRFACRLCGEKGHNRRTCRKLRISHSNGRVIKHHQCKICHQYGHNSRTCPQVVSNKIRDMASRRSYKCRLCHREGHNIRTCPSRTVVTEHPED 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4152g00017 318 Gene3D - 255 314 - -
Gabi4152g00017 318 ProSiteProfiles Zinc finger CCHC-type profile. 203 218 IPR001878 GO:0003676|GO:0008270
Gabi4152g00017 318 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 43 244 - -
Gabi4152g00017 318 SUPERFAMILY Retrovirus zinc finger-like domains 253 310 IPR036875 GO:0003676|GO:0008270
Gabi4152g00017 318 ProSiteProfiles Zinc finger CCHC-type profile. 230 245 IPR001878 GO:0003676|GO:0008270
Gabi4152g00017 318 Gene3D - 197 247 - -
Gabi4152g00017 318 Pfam Zinc knuckle 289 307 IPR025829 -
Gabi4152g00017 318 SMART c2hcfinal6 229 245 IPR001878 GO:0003676|GO:0008270
Gabi4152g00017 318 SMART c2hcfinal6 260 276 IPR001878 GO:0003676|GO:0008270
Gabi4152g00017 318 SMART c2hcfinal6 202 218 IPR001878 GO:0003676|GO:0008270
Gabi4152g00017 318 SMART c2hcfinal6 292 308 IPR001878 GO:0003676|GO:0008270
Gabi4152g00017 318 SUPERFAMILY Retrovirus zinc finger-like domains 200 246 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4152g00017 Gabi-Chr4152 144497 150707 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4152g00017 56 311 C2H2 Transcription Factor Family AT5G20220 45.562 6.64e-85 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4152g00017 - - gmx:100800156 453.751