Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4152g00016 ATGCCAACACTAACACCACCCTTTGTTCCTCACTCACCGATGACTCCTTTTCCATCCCAAAACCAACACAGTTGGGTTACAGTGCTCCAGGGGAACTGTTCGGACTGGATGAGGAATTTAAGCCAAGAGTGTCCAGCAAAGCTAACTCTCATACACCCGAACCAAGGTCCTGGTTTGGTCCAAATGGACAGTATATCAGAGAGTTACCATGTCCAAGTTGCCGGGGAAGGGGTTATACTCCTTGTACAGAGTGTGGAATTGAAAGATCAAGATCAGACTGTCCAATATGTAATGGAAAGTTCCCCACTTAAAGTGAAGGAAGATGACGAAGTTGACAACTTAGACATAAAGCTAAAAGTGAAGAAAAAATCCAAGCGTGTTTACCAGTCACCTTCTCCTGAAGTCGGATTAAAGATTAGTCGTTCATTAAAAAGTCTCAATGCTAAAACTGGTCTATTTAGCAACCGAATGAAGATTATCCACCAGGATCCCATGCTTCAGGCTCAGAGAGTGGCTGCTATTAAGAAAGCCAAGGGAACTGTTGCAGCAAGAAAGCAGACCTCCAAAGCAATGAAAGCTTACTTTAGTGATCCAATAAACCGTCAGAAAAGGAGCATGGCCATGAAGGGAGTGAAATTCTACTGCCAAAACTGTGGACGGGAAGGGCATAGGAGACACTACTGTCCAGAACTCAAGGATAGTTTGATTGATCGCAGGTTTGCATGTAGGCTATGTGGGGAAAAAGGCCACAACAGAAGAACGTGTAGAAAGTTAAGGATAAGCCATAGTAATGGGAGAGTTATAAAACACCATCAGTGTAAAATATGTCACCAATATGGCCATAACAGCAGGACATGCCCTCAAGTTGTTTCTAATAAAATAAGGGACATGGCCTCTCGAAGATCATACAAGTGTCGGTTGTGCCATAGAGAGGGACACAATATTAGGACATGCCCTAGTAGAACAGTTGTTACTGAACATCCTGAAGATTAA 993 0.432 MPTLTPPFVPHSPMTPFPSQNQHSWVTVLQGNCSDWMRNLSQECPAKLTLIHPNQGPGLVQMDSISESYHVQVAGEGVILLVQSVELKDQDQTVQYVMESSPLKVKEDDEVDNLDIKLKVKKKSKRVYQSPSPEVGLKISRSLKSLNAKTGLFSNRMKIIHQDPMLQAQRVAAIKKAKGTVAARKQTSKAMKAYFSDPINRQKRSMAMKGVKFYCQNCGREGHRRHYCPELKDSLIDRRFACRLCGEKGHNRRTCRKLRISHSNGRVIKHHQCKICHQYGHNSRTCPQVVSNKIRDMASRRSYKCRLCHREGHNIRTCPSRTVVTEHPED 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4152g00016 330 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 101 256 - -
Gabi4152g00016 330 SUPERFAMILY Retrovirus zinc finger-like domains 266 322 IPR036875 GO:0003676|GO:0008270
Gabi4152g00016 330 SUPERFAMILY Retrovirus zinc finger-like domains 212 258 IPR036875 GO:0003676|GO:0008270
Gabi4152g00016 330 Gene3D - 267 326 - -
Gabi4152g00016 330 Gene3D - 209 259 - -
Gabi4152g00016 330 ProSiteProfiles Zinc finger CCHC-type profile. 215 230 IPR001878 GO:0003676|GO:0008270
Gabi4152g00016 330 Pfam Zinc knuckle 301 319 IPR025829 -
Gabi4152g00016 330 ProSiteProfiles Zinc finger CCHC-type profile. 242 257 IPR001878 GO:0003676|GO:0008270
Gabi4152g00016 330 SMART c2hcfinal6 241 257 IPR001878 GO:0003676|GO:0008270
Gabi4152g00016 330 SMART c2hcfinal6 214 230 IPR001878 GO:0003676|GO:0008270
Gabi4152g00016 330 SMART c2hcfinal6 272 288 IPR001878 GO:0003676|GO:0008270
Gabi4152g00016 330 SMART c2hcfinal6 304 320 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4152g00016 Gabi-Chr4152 144497 150707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4152g00016 72 323 C2H2 Transcription Factor Family AT5G20220 56.391 2.95e-99 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4152g00016 - - gmx:100800156 405.986