Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4152g00015 ATGAATACCTATCAAGTTCACACGTTCCCCACTCCATTTCGCGTTCTGACATATCCATCCACAAAGCAACCAAACATGCATCTCTTGCTCTTGCTTCATGCCAACACTAACACCACCCTTTGTTCCTCACTCACCGATGACTCCTTTTCCATCCCAAAACCAACACAGTTGGGTTACAGTGCTCCAGGGGAACTGTTCGGACTGGATGAGGAATTTAAGCCAAGAGTGTCCAGCAAAGCTAACTCTCATACACCCGAACCAAGGTCCTGGTTTGGTCCAAATGGACAGTATATCAGAGAGTTACCATGTCCAAGTTGCCGGGGAAGGGGTTATACTCCTTGTACAGAGTGTGGAATTGAAAGATCAAGATCAGACTGTCCAATATGTAATGGAAAGGGTATACTGACTTGCCACCAGTGCTCTGGAGATTGTGTTATATGGGAAGAATCAATTGATGAACAACCATGGGAGAGAGCCCGTTCTACTTCCCCACTTAAAGTGAAGGAAGATGACGAAGTTGACAACTTAGACATAAAGCTAAAAGTGAAGAAAAAATCCAAGCGTGTTTACCAGTCACCTTCTCCTGAAGTCGGATTAAAGATTAGTCGTTCATTAAAAAGTCTCAATGCTAAAACTGGTCTATTTAGCAACCGAATGAAGATTATCCACCAGGATCCCATGCTTCAGGCTCAGAGAGTGGCTGCTATTAAGAAAGCCAAGGGAACTGTTGCAGCAAGAAAGCAGACCTCCAAAGCAATGAAAGCTTACTTTAGTGATCCAATAAACCGTCAGAAAAGGAGCATGGCCATGAAGGGAGTGAAATTCTACTGCCAAAACTGTGGACGGGAAGGGCATAGGAGACACTACTGTCCAGAACTCAAGGATAGTTTGATTGATCGCAGGTTTGCATGTAGGCTATGTGGGGAAAAAGGCCACAACAGAAGAACGTGTAGAAAGTTAAGGATAAGCCATAGTAATGGGAGAGTTATAAAACACCATCAGTGTAAAATATGTCACCAATATGGCCATAACAGCAGGACATGCCCTCAAGTTGTTTCTAATAAAATAAGGGACATGGCCTCTCGAAGATCATACAAGTGTCGGTTGTGCCATAGAGAGGGACACAATATTAGGACATGCCCTAGTAGAACAGTTGTTACTGAACATCCTGAAGATTAA 1179 0.4351 MNTYQVHTFPTPFRVLTYPSTKQPNMHLLLLLHANTNTTLCSSLTDDSFSIPKPTQLGYSAPGELFGLDEEFKPRVSSKANSHTPEPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRSDCPICNGKGILTCHQCSGDCVIWEESIDEQPWERARSTSPLKVKEDDEVDNLDIKLKVKKKSKRVYQSPSPEVGLKISRSLKSLNAKTGLFSNRMKIIHQDPMLQAQRVAAIKKAKGTVAARKQTSKAMKAYFSDPINRQKRSMAMKGVKFYCQNCGREGHRRHYCPELKDSLIDRRFACRLCGEKGHNRRTCRKLRISHSNGRVIKHHQCKICHQYGHNSRTCPQVVSNKIRDMASRRSYKCRLCHREGHNIRTCPSRTVVTEHPED 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4152g00015 392 Gene3D - 272 321 - -
Gabi4152g00015 392 Gene3D - 330 388 - -
Gabi4152g00015 392 Pfam Zinc knuckle 363 381 IPR025829 -
Gabi4152g00015 392 SMART c2hcfinal6 366 382 IPR001878 GO:0003676|GO:0008270
Gabi4152g00015 392 SMART c2hcfinal6 303 319 IPR001878 GO:0003676|GO:0008270
Gabi4152g00015 392 SMART c2hcfinal6 276 292 IPR001878 GO:0003676|GO:0008270
Gabi4152g00015 392 SMART c2hcfinal6 334 350 IPR001878 GO:0003676|GO:0008270
Gabi4152g00015 392 SUPERFAMILY Retrovirus zinc finger-like domains 274 320 IPR036875 GO:0003676|GO:0008270
Gabi4152g00015 392 ProSiteProfiles Zinc finger CCHC-type profile. 277 292 IPR001878 GO:0003676|GO:0008270
Gabi4152g00015 392 SUPERFAMILY Retrovirus zinc finger-like domains 327 384 IPR036875 GO:0003676|GO:0008270
Gabi4152g00015 392 ProSiteProfiles Zinc finger CCHC-type profile. 304 319 IPR001878 GO:0003676|GO:0008270
Gabi4152g00015 392 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 53 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4152g00015 Gabi-Chr4152 144497 150707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4152g00015 56 385 C2H2 Transcription Factor Family AT5G20220 65.385 1.61e-158 450