Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4152g00010 ATGAAGAAATTTTGGGTTTCTTTCTACTACTTGTTTCCTGCAATCATTCTTGTTCTATTTACTCCTACTTCAATTGCACAGCTAACACCAAGTGAGAATAGAATTATTTTCCAAGTTCAAAAACTTCTTCAATATCCTCAAGTTCTTCAAGGATGGACAAACTGGACCAACTTCTGCTTCCTCCCTCCATCACCTTCCCTTAAGATAGTGTGTTCAAATGGTCATGTGACAGAATTAACTATTGTTGGAAACAAGAGCTCCCCATCTTCACACAGCCCCATAACAGCTTCTTTGAATTCCATTCAAACTCTTTCAGCAAGCTTCTCCATTGATTCTTTATTTACTGTCATGACAAAGCTTTCAAATTTAAAGGTGTTGTCATTGGTGTCCTTGGGCTTGTGGGGTCCTTTACCAGCCAAGATCAACCGGTTCTGGTCTATGGAAGTGCTAAACATTAGCTCAAATTTCATTCATGGAGAAATCCCATCATCAATATCATCAATGAAGAATCTGAGGAGTCTGGTGTTGGCTGATAATCTCTTCAATGGAAGTGTCCCAGATCTCACAAGGCTAACTTCTCTTGAAGAGCTCAATTTGGGTGGTAACAAACTTGGTCCTGAATTCCCTTCTGTGGAAAACAATCTTGTGAGTATTATCTTGAGAAAGAATTCTCTGAGATATCAGATTCCTCCCCAACTAATGCACTTTGATAAACTTCAGATATTTGACATCTCTTCCAATGAAATGTTTGGAAATATCCCAACCTCTCTCTTCTCTCTTCCTTCCCTCCAGTACCTAAACTTGGCTACAAACCATCTAAGAGGTAACCTCTCAGTGAATATAGCTTGTAGTTCTGCACTAACATATGTGGATATCTCAAGCAACCTTCTGCAAGGAAAATTACCATCCTGCCTTGGTTCATTGTCTTCAAAGGCCAAGGTACTATATTCTGGGAATTGTTTGTCAACAACCAGAAAGTTAAATGATCAACAACATCCATCTTCATATTGCAAGAAAGAAGCAGCCTTAGCTGTTAAGCCTCCTCAAGCTAAAATGGCGAAGAAGGAATCAGGTATGGAACTAGGCCTAGTACTTGGTATAATTGGAGGGGTTGTTGGAATTGCAGCACTTCTGGCTCTACTCATTGCGTTCATCTTGAGGAAGTCCAAAGCAGAAAGATTAGATCATAAGATTCACAGATCTGTTGCTGATAAATTTTCTGCCCGTGCTTCTTCAAGACCAAATATTGATGCAAGACGTGTTCCTCAGACAATGAGGCTAGCTGCAGTTGGACTGCCACCATACTGTATTTTCACATCAGAGGAAATTGAAGATGCAACAAACAACTTTGACCCATCAAATTTAATAGGAGAAGGATCACAGGGACAGCTATATAAAGGTTGGCTCAGAGATGGTTCAGTGGTCCTAGTTAATTGTATAAAAATAAAGCAAAAGGGTTTGCCCCGCAGCATTATGCAGCACCTAGAGGTATTACCCAATTTGAGACATAGGCATATAGTGAGTGTTCTAGGACACTGTGTAATTACTCACCAGGACCCTCCCCAAACAACAAGCACAGTCTTCGTTGTATTTGAACACGTCTCAAATGTTTCATTAAGGGATCAACTTACAGATGGGAGAAAGAGGGAAATGCTGAAATGGCCACAGAGAATGGCAATCAGCATAGGCATTGCAAGAGGAATCCATTTCTTACACACAGGAGTTGCTCCTGCCATATTTGGCAACAATTTGAAGATTGAGAACATTCTGTTGGATGATAGTCTCAATGCAAAAGTCAGTAAATACAGCATTCCTTTGCCATCCAAGAGTGCACTTAGTGAACAAAGTGCCCCCAAAAATATTGGCAGCACAAATAATGCAGAAAAGGAAGATATCTACCAGCTTGGTGTTATTCTACTTGAAATTATCACTGGCAAACAAATTACATCCTCTAGTGAAGTAGAGGAGCTGAAGGATGAGCTGGAGAAAGGTTCATCAGAAGCAGCATCAATACTAAGAAGTGCTATTGATCCTTCCCTGAGAGGAACTTATGCATATGAATCAATGAAGACTGCAGTTCAGATTACAATGAATTGTCTATACAAGGTTTCTAGTAATCGGCCTTCAATAGAGGATGTTCTGTGGAATTTACAGTACTCAATGCAAGTTCAAGAGTCGTGGACCAGCAGTGGAAACCTCAGCACAAAATTGTAA 2214 0.4011 MKKFWVSFYYLFPAIILVLFTPTSIAQLTPSENRIIFQVQKLLQYPQVLQGWTNWTNFCFLPPSPSLKIVCSNGHVTELTIVGNKSSPSSHSPITASLNSIQTLSASFSIDSLFTVMTKLSNLKVLSLVSLGLWGPLPAKINRFWSMEVLNISSNFIHGEIPSSISSMKNLRSLVLADNLFNGSVPDLTRLTSLEELNLGGNKLGPEFPSVENNLVSIILRKNSLRYQIPPQLMHFDKLQIFDISSNEMFGNIPTSLFSLPSLQYLNLATNHLRGNLSVNIACSSALTYVDISSNLLQGKLPSCLGSLSSKAKVLYSGNCLSTTRKLNDQQHPSSYCKKEAALAVKPPQAKMAKKESGMELGLVLGIIGGVVGIAALLALLIAFILRKSKAERLDHKIHRSVADKFSARASSRPNIDARRVPQTMRLAAVGLPPYCIFTSEEIEDATNNFDPSNLIGEGSQGQLYKGWLRDGSVVLVNCIKIKQKGLPRSIMQHLEVLPNLRHRHIVSVLGHCVITHQDPPQTTSTVFVVFEHVSNVSLRDQLTDGRKREMLKWPQRMAISIGIARGIHFLHTGVAPAIFGNNLKIENILLDDSLNAKVSKYSIPLPSKSALSEQSAPKNIGSTNNAEKEDIYQLGVILLEIITGKQITSSSEVEELKDELEKGSSEAASILRSAIDPSLRGTYAYESMKTAVQITMNCLYKVSSNRPSIEDVLWNLQYSMQVQESWTSSGNLSTKL 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4152g00010 737 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 366 726 - -
Gabi4152g00010 737 Gene3D Transferase(Phosphotransferase) domain 1 534 732 - -
Gabi4152g00010 737 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 29 213 - -
Gabi4152g00010 737 Gene3D Ribonuclease Inhibitor 215 343 IPR032675 -
Gabi4152g00010 737 ProSiteProfiles Protein kinase domain profile. 450 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4152g00010 737 SUPERFAMILY L domain-like 54 324 - -
Gabi4152g00010 737 Pfam Protein kinase domain 453 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4152g00010 737 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 534 733 - -
Gabi4152g00010 737 Gene3D Ribonuclease Inhibitor 29 214 IPR032675 -
Gabi4152g00010 737 Gene3D Phosphorylase Kinase; domain 1 417 519 - -
Gabi4152g00010 737 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 423 523 - -
Gabi4152g00010 737 SUPERFAMILY Protein kinase-like (PK-like) 430 717 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4152g00010 Gabi-Chr4152 88443 91812 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4152g00010 45 737 Miscellaneous Gene Families AT3G03770 40.587 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Gabi4152g00010 Pkinase 4.7e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4152g00010 - - gmx:100803061 1114.75