Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4152g00007 ATGGGTAACTGCCTAGTTTCTTCAGCTAAAGAAGATGCGGCTCATAGTTCCACAACCGTTTCTGGAATTTCAAAAACTAGTACTTCATCTGCTCCTTCCACCTTATCTATTCTGACATACAGTGAAAAAAGTGATGTCTCAAGTCTTCCCACACCAAGGTCTGAGGGTGAAATCTTGTCTTCGCCAAATGTTAAGGCCTTCATGTTCAATGAGCTAAAGAATGCCACCAGAAACTTTCGTCCCGACAGTCTTCTTGGTGAAGGAGGATTTGGTTATGTTTATAAGGGTTGGATTGATGAACACACATTTACAGCTGCAAAACCTGGATCAGGAATTATCGTTGCCGTAAAGAAACTTAAGCCTGAAGGTTTACAAGGTCATAAGGAGTGGTTGACTGAAGTTAACTATCTCGGGCAACTTCACCATCATAACCTGGTTAAACTGATTGGGTACTGTGTGGAGGGAGAGAACCGGTTGTTGGTCTATGAGTTTATGCCCAAAGGGAGCTTAGAGAATCATCTGTTTAGAAGAGGACCACAACCACTCTCTTGGTCAGTGAGGATGAAAGTGGCTATTGGTGCTGCCAGAGGACTTTCTTTTCTTCATAATGCCAAATCGCAAGTCATATACCGTGATTTCAAAGCAGCTAATATCCTGCTAGATGCAGATTTCAATGCTAAACTCTCTGATTTTGGCTTAGCGAAGGCTGGCCCTACGGGTGATAGAACTCATGTCTCTACTCAAGTCCTGGGCACCCATGGATATGCTGCCCCTGAATATATTGCAACAGGTAGGTTGACAACCAAAAGTGATGTATACAGCTTTGGGGTTGTGTTGCTTGAACTTTTGTCTGGAAGACGTGCAGTTGATAGAACAAAAGCTGGTATAGAGCAGAGTCTGGTAGACTGGGCAAAACCATATTTGGGTGACAAAAGAAGACTATTTAGGATTATGGACACCAAGTTGGGGGGCCAATACCCTCTAAAGGGAGCCTACATGGCTGCTACTCTTGCTGTAAAATGCCTTAGTGAAGCCAAGGAAAGGCCTCCAATGACAGAGGTATTAGAAACATTGGAACAGATTGAAGTCCCTAAAAATAGAGGGCGAAACTCCCAATTGGAACAGAAGAGAGTCCAGAAGAGAGTCCATGTTGCTGTAAGAAAGTCTCCTGCACAGAATCTTACCTCTTTAAATTTTACTCGCACTGAATTCCCATTGCCATCTCCCAGACAATCTGCCTTTGTACACTAA 1251 0.4341 MGNCLVSSAKEDAAHSSTTVSGISKTSTSSAPSTLSILTYSEKSDVSSLPTPRSEGEILSSPNVKAFMFNELKNATRNFRPDSLLGEGGFGYVYKGWIDEHTFTAAKPGSGIIVAVKKLKPEGLQGHKEWLTEVNYLGQLHHHNLVKLIGYCVEGENRLLVYEFMPKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKAANILLDADFNAKLSDFGLAKAGPTGDRTHVSTQVLGTHGYAAPEYIATGRLTTKSDVYSFGVVLLELLSGRRAVDRTKAGIEQSLVDWAKPYLGDKRRLFRIMDTKLGGQYPLKGAYMAATLAVKCLSEAKERPPMTEVLETLEQIEVPKNRGRNSQLEQKRVQKRVHVAVRKSPAQNLTSLNFTRTEFPLPSPRQSAFVH 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4152g00007 416 CDD STKc_IRAK 85 361 - -
Gabi4152g00007 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Gabi4152g00007 416 FunFam Serine/threonine-protein kinase BIK1 46 164 - -
Gabi4152g00007 416 Gene3D Phosphorylase Kinase; domain 1 55 164 - -
Gabi4152g00007 416 SUPERFAMILY Protein kinase-like (PK-like) 49 358 IPR011009 -
Gabi4152g00007 416 MobiDBLite consensus disorder prediction 1 31 - -
Gabi4152g00007 416 ProSiteProfiles Protein kinase domain profile. 79 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4152g00007 416 Gene3D Transferase(Phosphotransferase) domain 1 165 387 - -
Gabi4152g00007 416 ProSitePatterns Protein kinases ATP-binding region signature. 85 118 IPR017441 GO:0005524
Gabi4152g00007 416 MobiDBLite consensus disorder prediction 10 31 - -
Gabi4152g00007 416 PANTHER OS01G0588500 PROTEIN-RELATED 34 362 - -
Gabi4152g00007 416 Pfam Protein tyrosine and serine/threonine kinase 83 288 IPR001245 GO:0004672|GO:0006468
Gabi4152g00007 416 FunFam Serine/threonine-protein kinase PBS1 165 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4152g00007 Gabi-Chr4152 53083 56534 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4152g00007 55 358 Glycoside Hydrolase AT3G07070 53.247 7.15e-109 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi4152g00007 PK_Tyr_Ser-Thr 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4152g00007 - - gmx:100305401 688.337