Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4152g00006 ATGGGTAACTGCCTAGTTTCTTCAGCTAAAGAAGATGCGGCTCATAGTTCCACAACCGTTTCTGCATCAGGAATTTCAAAAACTAGTACTTCATCTGCTCCTTCCACCTTATCTATTCTGACATACAGTGAAAAAAGTGATGTCTCAAGTCTTCCCACACCAAGGTCTGAGGGTGAAATCTTGTCTTCGCCAAATGTTAAGGCCTTCATGTTCAATGAGCTAAAGAATGCCACCAGAAACTTTCGTCCCGACAGTCTTCTTGGTGAAGGAGGATTTGGTTATGTTTATAAGGGTTGGATTGATGAACACACATTTACAGCTGCAAAACCTGGATCAGGAATTATCGTTGCCGTAAAGAAACTTAAGCCTGAAGGTTTACAAGGTCATAAGGAGTGGTTGACTGAAGTTAACTATCTCGGGCAACTTCACCATCATAACCTGGTTAAACTGATTGGGTACTGTGTGGAGGGAGAGAACCGGTTGTTGGTCTATGAGTTTATGCCCAAAGGGAGCTTAGAGAATCATCTGTTTAGAAGAGGACCACAACCACTCTCTTGGTCAGTGAGGATGAAAGTGGCTATTGGTGCTGCCAGAGGACTTTCTTTTCTTCATAATGCCAAATCGCAAGTCATATACCGTGATTTCAAAGCAGCTAATATCCTGCTAGATGCAGATTTCAATGCTAAACTCTCTGATTTTGGCTTAGCGAAGGCTGGCCCTACGGGTGATAGAACTCATGTCTCTACTCAAGTCCTGGGCACCCATGGATATGCTGCCCCTGAATATATTGCAACAGGTAGGTTGACAACCAAAAGTGATGTATACAGCTTTGGGGTTGTGTTGCTTGAACTTTTGTCTGGAAGACGTGCAGTTGATAGAACAAAAGCTGGTATAGAGCAGAGTCTGGTAGACTGGGCAAAACCATATTTGGGTGACAAAAGAAGACTATTTAGGATTATGGACACCAAGTTGGGGGGCCAATACCCTCTAAAGGGAGCCTACATGGCTGCTACTCTTGCTGTAAAATGCCTTAGTGAAGCCAAGGAAAGGCCTCCAATGACAGAGGTATTAGAAACATTGGAACAGATTGAAGTCCCTAAAAATAGAGGGCGAAACTCCCAATTGGAACAGAAGAGAGTCCAGAAGAGAGTCCATGTTGCTGTAAGAAAGTCTCCTGCACAGAATCTTACCTCTTTAAATTTTACTCGCACTGAATTCCCATTGCCATCTCCCAGACAATCTGCCTTTGTACACTAA 1257 0.4344 MGNCLVSSAKEDAAHSSTTVSASGISKTSTSSAPSTLSILTYSEKSDVSSLPTPRSEGEILSSPNVKAFMFNELKNATRNFRPDSLLGEGGFGYVYKGWIDEHTFTAAKPGSGIIVAVKKLKPEGLQGHKEWLTEVNYLGQLHHHNLVKLIGYCVEGENRLLVYEFMPKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKAANILLDADFNAKLSDFGLAKAGPTGDRTHVSTQVLGTHGYAAPEYIATGRLTTKSDVYSFGVVLLELLSGRRAVDRTKAGIEQSLVDWAKPYLGDKRRLFRIMDTKLGGQYPLKGAYMAATLAVKCLSEAKERPPMTEVLETLEQIEVPKNRGRNSQLEQKRVQKRVHVAVRKSPAQNLTSLNFTRTEFPLPSPRQSAFVH 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4152g00006 418 Gene3D Transferase(Phosphotransferase) domain 1 167 389 - -
Gabi4152g00006 418 PANTHER OS01G0588500 PROTEIN-RELATED 32 364 - -
Gabi4152g00006 418 MobiDBLite consensus disorder prediction 1 33 - -
Gabi4152g00006 418 FunFam Serine/threonine-protein kinase BIK1 48 166 - -
Gabi4152g00006 418 Gene3D Phosphorylase Kinase; domain 1 57 166 - -
Gabi4152g00006 418 MobiDBLite consensus disorder prediction 10 33 - -
Gabi4152g00006 418 ProSiteProfiles Protein kinase domain profile. 81 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4152g00006 418 CDD STKc_IRAK 87 363 - -
Gabi4152g00006 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Gabi4152g00006 418 ProSitePatterns Protein kinases ATP-binding region signature. 87 120 IPR017441 GO:0005524
Gabi4152g00006 418 SUPERFAMILY Protein kinase-like (PK-like) 51 360 IPR011009 -
Gabi4152g00006 418 Pfam Protein tyrosine and serine/threonine kinase 85 290 IPR001245 GO:0004672|GO:0006468
Gabi4152g00006 418 FunFam Serine/threonine-protein kinase PBS1 167 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4152g00006 Gabi-Chr4152 53083 56534 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4152g00006 57 360 Glycoside Hydrolase AT3G07070 53.247 3.66e-109 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi4152g00006 PK_Tyr_Ser-Thr 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4152g00006 - - gmx:100305401 669.848