Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4152g00005 ATGGGTAACTGCCTAGTTTCTTCAGCTAAAGAAGATGCGGCTCATAGTTCCACAACCGTTTCTGGTAGAATTTCAAAAACTAGTACTTCATCTGCTCCTTCCACCTTATCTATTCTGACATACAGTGAAAAAAGTGATGTCTCAAGTCTTCCCACACCAAGGTCTGAGGGTGAAATCTTGTCTTCGCCAAATGTTAAGGCCTTCATGTTCAATGAGCTAAAGAATGCCACCAGAAACTTTCGTCCCGACAGTCTTCTTGGTGAAGGAGGATTTGGTTATGTTTATAAGGGTTGGATTGATGAACACACATTTACAGCTGCAAAACCTGGATCAGGAATTATCGTTGCCGTAAAGAAACTTAAGCCTGAAGGTTTACAAGGTCATAAGGAGTGGTTGACTGAAGTTAACTATCTCGGGCAACTTCACCATCATAACCTGGTTAAACTGATTGGGTACTGTGTGGAGGGAGAGAACCGGTTGTTGGTCTATGAGTTTATGCCCAAAGGGAGCTTAGAGAATCATCTGTTTAGAAGAGGACCACAACCACTCTCTTGGTCAGTGAGGATGAAAGTGGCTATTGGTGCTGCCAGAGGACTTTCTTTTCTTCATAATGCCAAATCGCAAGTCATATACCGTGATTTCAAAGCAGCTAATATCCTGCTAGATGCAGATTTCAATGCTAAACTCTCTGATTTTGGCTTAGCGAAGGCTGGCCCTACGGGTGATAGAACTCATGTCTCTACTCAAGTCCTGGGCACCCATGGATATGCTGCCCCTGAATATATTGCAACAGGTAGGTTGACAACCAAAAGTGATGTATACAGCTTTGGGGTTGTGTTGCTTGAACTTTTGTCTGGAAGACGTGCAGTTGATAGAACAAAAGCTGGTATAGAGCAGAGTCTGGTAGACTGGGCAAAACCATATTTGGGTGACAAAAGAAGACTATTTAGGATTATGGACACCAAGTTGGGGGGCCAATACCCTCTAAAGGGAGCCTACATGGCTGCTACTCTTGCTGTAAAATGCCTTAGTGAAGCCAAGGAAAGGCCTCCAATGACAGAGGTATTAGAAACATTGGAACAGATTGAAGTCCCTAAAAATAGAGGGCGAAACTCCCAATTGGAACAGAAGAGAGTCCAGAAGAGAGTCCATGTTGCTGTAAGAAAGTCTCCTGCACAGAATCTTACCTCTTTAAATTTTACTCGCACTGAATTCCCATTGCCATCTCCCAGACAATCTGCCTTTGTACACTAA 1254 0.4338 MGNCLVSSAKEDAAHSSTTVSGRISKTSTSSAPSTLSILTYSEKSDVSSLPTPRSEGEILSSPNVKAFMFNELKNATRNFRPDSLLGEGGFGYVYKGWIDEHTFTAAKPGSGIIVAVKKLKPEGLQGHKEWLTEVNYLGQLHHHNLVKLIGYCVEGENRLLVYEFMPKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKAANILLDADFNAKLSDFGLAKAGPTGDRTHVSTQVLGTHGYAAPEYIATGRLTTKSDVYSFGVVLLELLSGRRAVDRTKAGIEQSLVDWAKPYLGDKRRLFRIMDTKLGGQYPLKGAYMAATLAVKCLSEAKERPPMTEVLETLEQIEVPKNRGRNSQLEQKRVQKRVHVAVRKSPAQNLTSLNFTRTEFPLPSPRQSAFVH 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4152g00005 417 Pfam Protein tyrosine and serine/threonine kinase 84 289 IPR001245 GO:0004672|GO:0006468
Gabi4152g00005 417 ProSitePatterns Protein kinases ATP-binding region signature. 86 119 IPR017441 GO:0005524
Gabi4152g00005 417 Gene3D Phosphorylase Kinase; domain 1 56 165 - -
Gabi4152g00005 417 FunFam Serine/threonine-protein kinase BIK1 47 165 - -
Gabi4152g00005 417 SUPERFAMILY Protein kinase-like (PK-like) 50 359 IPR011009 -
Gabi4152g00005 417 MobiDBLite consensus disorder prediction 1 31 - -
Gabi4152g00005 417 Gene3D Transferase(Phosphotransferase) domain 1 166 388 - -
Gabi4152g00005 417 MobiDBLite consensus disorder prediction 10 31 - -
Gabi4152g00005 417 PANTHER OS01G0588500 PROTEIN-RELATED 35 363 - -
Gabi4152g00005 417 FunFam Serine/threonine-protein kinase PBS1 166 378 - -
Gabi4152g00005 417 CDD STKc_IRAK 86 362 - -
Gabi4152g00005 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Gabi4152g00005 417 ProSiteProfiles Protein kinase domain profile. 80 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4152g00005 Gabi-Chr4152 53083 56534 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4152g00005 20 359 Glycoside Hydrolase AT3G07070 49.419 4.95e-109 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi4152g00005 PK_Tyr_Ser-Thr 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4152g00005 - - gmx:100305401 683.715