Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4152g00004 ATGGGTAACTGCCTAGTTTCTTCAGCTAAAGAAGATGCGGCTCATAGTTCCACAACCGTTTCTGGTACATCAGGAATTTCAAAAACTAGTACTTCATCTGCTCCTTCCACCTTATCTATTCTGACATACAGTGAAAAAAGTGATGTCTCAAGTCTTCCCACACCAAGGTCTGAGGGTGAAATCTTGTCTTCGCCAAATGTTAAGGCCTTCATGTTCAATGAGCTAAAGAATGCCACCAGAAACTTTCGTCCCGACAGTCTTCTTGGTGAAGGAGGATTTGGTTATGTTTATAAGGGTTGGATTGATGAACACACATTTACAGCTGCAAAACCTGGATCAGGAATTATCGTTGCCGTAAAGAAACTTAAGCCTGAAGGTTTACAAGGTCATAAGGAGTGGTTGACTGAAGTTAACTATCTCGGGCAACTTCACCATCATAACCTGGTTAAACTGATTGGGTACTGTGTGGAGGGAGAGAACCGGTTGTTGGTCTATGAGTTTATGCCCAAAGGGAGCTTAGAGAATCATCTGTTTAGAAGAGGACCACAACCACTCTCTTGGTCAGTGAGGATGAAAGTGGCTATTGGTGCTGCCAGAGGACTTTCTTTTCTTCATAATGCCAAATCGCAAGTCATATACCGTGATTTCAAAGCAGCTAATATCCTGCTAGATGCAGATTTCAATGCTAAACTCTCTGATTTTGGCTTAGCGAAGGCTGGCCCTACGGGTGATAGAACTCATGTCTCTACTCAAGTCCTGGGCACCCATGGATATGCTGCCCCTGAATATATTGCAACAGGTAGGTTGACAACCAAAAGTGATGTATACAGCTTTGGGGTTGTGTTGCTTGAACTTTTGTCTGGAAGACGTGCAGTTGATAGAACAAAAGCTGGTATAGAGCAGAGTCTGGTAGACTGGGCAAAACCATATTTGGGTGACAAAAGAAGACTATTTAGGATTATGGACACCAAGTTGGGGGGCCAATACCCTCTAAAGGGAGCCTACATGGCTGCTACTCTTGCTGTAAAATGCCTTAGTGAAGCCAAGGAAAGGCCTCCAATGACAGAGGTATTAGAAACATTGGAACAGATTGAAGTCCCTAAAAATAGAGGGCGAAACTCCCAATTGGAACAGAAGAGAGTCCAGAAGAGAGTCCATGTTGCTGTAAGAAAGTCTCCTGCACAGAATCTTACCTCTTTAAATTTTACTCGCACTGAATTCCCATTGCCATCTCCCAGACAATCTGCCTTTGTACACTAA 1260 0.4341 MGNCLVSSAKEDAAHSSTTVSGTSGISKTSTSSAPSTLSILTYSEKSDVSSLPTPRSEGEILSSPNVKAFMFNELKNATRNFRPDSLLGEGGFGYVYKGWIDEHTFTAAKPGSGIIVAVKKLKPEGLQGHKEWLTEVNYLGQLHHHNLVKLIGYCVEGENRLLVYEFMPKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKAANILLDADFNAKLSDFGLAKAGPTGDRTHVSTQVLGTHGYAAPEYIATGRLTTKSDVYSFGVVLLELLSGRRAVDRTKAGIEQSLVDWAKPYLGDKRRLFRIMDTKLGGQYPLKGAYMAATLAVKCLSEAKERPPMTEVLETLEQIEVPKNRGRNSQLEQKRVQKRVHVAVRKSPAQNLTSLNFTRTEFPLPSPRQSAFVH 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4152g00004 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Gabi4152g00004 419 SUPERFAMILY Protein kinase-like (PK-like) 52 361 IPR011009 -
Gabi4152g00004 419 FunFam Serine/threonine-protein kinase PBS1 168 380 - -
Gabi4152g00004 419 CDD STKc_IRAK 88 364 - -
Gabi4152g00004 419 MobiDBLite consensus disorder prediction 1 34 - -
Gabi4152g00004 419 FunFam Serine/threonine-protein kinase BIK1 49 167 - -
Gabi4152g00004 419 Gene3D Phosphorylase Kinase; domain 1 58 167 - -
Gabi4152g00004 419 Gene3D Transferase(Phosphotransferase) domain 1 168 390 - -
Gabi4152g00004 419 Pfam Protein tyrosine and serine/threonine kinase 86 291 IPR001245 GO:0004672|GO:0006468
Gabi4152g00004 419 ProSitePatterns Protein kinases ATP-binding region signature. 88 121 IPR017441 GO:0005524
Gabi4152g00004 419 MobiDBLite consensus disorder prediction 10 34 - -
Gabi4152g00004 419 PANTHER OS01G0588500 PROTEIN-RELATED 37 365 - -
Gabi4152g00004 419 ProSiteProfiles Protein kinase domain profile. 82 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4152g00004 Gabi-Chr4152 53083 56534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4152g00004 58 361 Glycoside Hydrolase AT3G07070 53.247 3.59e-109 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi4152g00004 PK_Tyr_Ser-Thr 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4152g00004 - - gmx:100305401 664.07