Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4152g00001 ATGCAAGATATGAAGCAGCAGAAGCAGAAGTGCAATGAAGAATCTAAGAAGAAGGAGCGTCATATTGTGACTTGGACTCAAGAGGAGGATGATATCCTTAGAGAGCAAATTGGTATTAATGGAACTGAAAATTGGGCAATAATTGCATCTAAATTCAAGGACAAAACAACAAGACAGTGCAGAAGAAGATGGTACACTTACTTGAATTCTGATTTCAAGAAAGGTGGATGGTCACCAGAGGAAGACATGCTCTTATGTGAGGCTCAAAAATTATTTGGTAACAGATGGACGGAAATAGCAAAGGTGGTTTCAGGAAGAACGGATAATGCTGTGAAAAACCGTTTCTCCACCCTATGCAGAAAGAGAGAAAAATATGCAGCTTTAGCAAAAGAGAACAACACTTCATACATCAATTCAAATAACAAGAGGATCATGTTCCAACATGGTTATAATACAGATGCAACATCAGAATCTGCAGTACCTTTTAAGAAGATGAGAAGGGCCCATATCCCTGATGATGCAGAAAAGATCAACTTCGGGGACAGATTACATTTGCAGAATGGAACTCCAATAAATCAGCAGCCAAGAGAACCGTTTGCAGTATTAGCTCAAAACTCCCATAATGTAAACAGCTTGCGAGACCAGGATCATGTTTGCAATGCCAAGTTTAGCAGTTCCGCTTCTGCAGCTCAAAATAACAAGATTCAAGGAGCATTCCTTAAAAAGGATGACCCAAAGATAAGTGCATTGATGCAACAAGCAGAGTTACTAAGTTCGCTAGCTTTAAAAATTGATACAGAGAACATGGACCAAAGTCTTGAAAACACATGGAAGGTTCTTCAAGAGTTTCTGAACCGAGCCAAACAATCAGATATCCCTAGAAATAAGTTATCCGATTTACAGCTTGTAGATCTTAAAGATATTTTTGAGGACTTGAAGAGTAGTAATGAGGGAGGCCAGCCCTGTTGGAGGAAAATGGAACTACTTGAAGACTCTCCATGCAGTTCTGAATACAGTACAGGGTCAACTCTCCTGCCTCACTCAGCTGGTGATAATTTGGAACACTCATTGCATCAGTATATTGGAACTGAAATGAAGTCTACACAATTTGGAGATAAAAAAGTTTTAAGAGCAGGTGAGAAAGGGGTTCTTTCCACTGCAAATGTGGATCAAGATATGTTACCATATTGTGAGGTACAGATAAACAATGATGGCAATGTTTCTTCCTCGTCAAAATTGGAGTTCAGTTCCCCTCTTAAAGTAACCCCTTTGTTCAGATCCTTGGCTGCAGAAATCCCCAGCCCACAATTTTCGGAAAGTGAAAGGAACTTCCTGAGGAAAACACTAGGAATGGAGTCTCCATCCTTCAACCCAAGTGCCAAGCCCTTGCAACCGCCTCCCTGCAAAAGAGCCCTATTACATAGTCTATAA 1431 0.4032 MQDMKQQKQKCNEESKKKERHIVTWTQEEDDILREQIGINGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKLFGNRWTEIAKVVSGRTDNAVKNRFSTLCRKREKYAALAKENNTSYINSNNKRIMFQHGYNTDATSESAVPFKKMRRAHIPDDAEKINFGDRLHLQNGTPINQQPREPFAVLAQNSHNVNSLRDQDHVCNAKFSSSASAAQNNKIQGAFLKKDDPKISALMQQAELLSSLALKIDTENMDQSLENTWKVLQEFLNRAKQSDIPRNKLSDLQLVDLKDIFEDLKSSNEGGQPCWRKMELLEDSPCSSEYSTGSTLLPHSAGDNLEHSLHQYIGTEMKSTQFGDKKVLRAGEKGVLSTANVDQDMLPYCEVQINNDGNVSSSSKLEFSSPLKVTPLFRSLAAEIPSPQFSESERNFLRKTLGMESPSFNPSAKPLQPPPCKRALLHSL 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4152g00001 476 ProSiteProfiles Myb-like domain profile. 25 68 IPR001005 -
Gabi4152g00001 476 PANTHER MYB PROTEIN-RELATED 24 207 - -
Gabi4152g00001 476 Pfam Myb-like DNA-binding domain 25 85 - -
Gabi4152g00001 476 Coils Coil 1 21 - -
Gabi4152g00001 476 CDD SANT 77 118 IPR001005 -
Gabi4152g00001 476 Gene3D - 76 145 - -
Gabi4152g00001 476 FunFam Transcription factor MYB124 17 73 - -
Gabi4152g00001 476 SUPERFAMILY Homeodomain-like 21 115 IPR009057 -
Gabi4152g00001 476 SMART sant 21 70 IPR001005 -
Gabi4152g00001 476 SMART sant 73 121 IPR001005 -
Gabi4152g00001 476 Gene3D - 12 73 - -
Gabi4152g00001 476 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 68 IPR017930 -
Gabi4152g00001 476 CDD SANT 24 68 IPR001005 -
Gabi4152g00001 476 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Gabi4152g00001 476 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4152g00001 Gabi-Chr4152 27343 34299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4152g00001 13 324 MYB Transcription Factor Family AT2G02820 60.759 3.79e-135 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4152g00001 Myb_DNA-bind_6 4.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4152g00001 K09422 - gmx:100807667 727.243