Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4147g00085 ATGAATCATCGACATATCGAAGAGCATATGATGCTTATCTCTCAGTTATACCCTGCTGGTGCATACACTCAAATAATTGCTGAACAGGGGGAGAAGAAGCCAAGACGCAGGCGTAATAAGAAGAACAAAGGAGGAGAAAACGGGGCTGCGGAAGCCAACAAGAAGAGGAAGCTCAGTGAAGAGCAAGTTAATCTACTTGAACAGAACTTTGGAAATGAGCATAAACTCGAGTCCGAAAGGAAGGACAAGCTCGCAATGGAGCTTGGTTTGGATCCTCGACAAGTTGCTGTTTGGTTTCAAAACAGAAGAGCTCGTTGGAAGAACAAAAAATTGGAAGAAGAGTACTCAACTCTTAAAAAAGCCCATGAAACCACCACGCTTGAGAAATGTCGCCTGGAAACTGAGGTGTTGAAGCTTAAGGATCAACTTTCCGAGGCAGAAAAGGAGATTCAGCGCCTACTAGAGCGTGCTGACAGAGTCCCAAGCAACAGCTCCAGTTCACAGTCACAGTCACAGTCAATGGAAGCTGTGGACCCACCATTTCTTGGAGAGTTTGGAGTAGATGGATATGACGATGACGTGTTTCACGTGCCCGAGACTCATTACATCTATGGCATGGAATGGATTAATCTGTATATGTAA 642 0.4486 MNHRHIEEHMMLISQLYPAGAYTQIIAEQGEKKPRRRRNKKNKGGENGAAEANKKRKLSEEQVNLLEQNFGNEHKLESERKDKLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHETTTLEKCRLETEVLKLKDQLSEAEKEIQRLLERADRVPSNSSSSQSQSQSMEAVDPPFLGEFGVDGYDDDVFHVPETHYIYGMEWINLYM 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4147g00085 213 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 31 171 IPR045224 GO:0003700
Gabi4147g00085 213 FunFam homeobox-leucine zipper protein ATHB-40 48 117 - -
Gabi4147g00085 213 Gene3D - 45 118 - -
Gabi4147g00085 213 Coils Coil 136 163 - -
Gabi4147g00085 213 Coils Coil 49 69 - -
Gabi4147g00085 213 MobiDBLite consensus disorder prediction 154 175 - -
Gabi4147g00085 213 MobiDBLite consensus disorder prediction 158 175 - -
Gabi4147g00085 213 ProSiteProfiles 'Homeobox' domain profile. 49 109 IPR001356 GO:0003677
Gabi4147g00085 213 CDD homeodomain 54 110 IPR001356 GO:0003677
Gabi4147g00085 213 SMART HOX_1 52 113 IPR001356 GO:0003677
Gabi4147g00085 213 MobiDBLite consensus disorder prediction 43 59 - -
Gabi4147g00085 213 Pfam Homeodomain 54 108 IPR001356 GO:0003677
Gabi4147g00085 213 PRINTS Lambda-repressor HTH signature 80 89 IPR000047 GO:0003677
Gabi4147g00085 213 PRINTS Lambda-repressor HTH signature 89 105 IPR000047 GO:0003677
Gabi4147g00085 213 SUPERFAMILY Homeodomain-like 54 118 IPR009057 -
Gabi4147g00085 213 MobiDBLite consensus disorder prediction 28 59 - -
Gabi4147g00085 213 Coils Coil 101 128 - -
Gabi4147g00085 213 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4147g00085 Gabi-Chr4147 721866 723631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4147g00085 1 213 Homeobox Transcription Factor Family AT4G36740 55.455 6.28e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gabi4147g00085 Homeodomain 4.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4147g00085 K09338 - gmx:100809616 330.872