LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4147g00084	ATGATGATTATTGTGCAAATAACATATCTTTTGTATCTATTGACTTTTGACAATGTTGCTGCTGATTTCGATGATGGCTTTGTCTTTGATATTGATCCTAGCTTGCTAGTGGACCATGATAAACTAACCATTGGCGACATGATCGGAGAAGGGTCTCACTCGATTGTCTACAAAGGATGGTACGAAGACCATCCTGTTGCTATAAAGGTTATACTCCCAGAAAGAACCAGGGATGCTACCCCAGAATGTAAGGCGAAATTTCAGAGGGAGGTGAACTTGATATCTAGGATTAAACATAAAAATATTGTGAAGTTTATTGGCGCCTCTGTGGAACCATCAATGGTGATAATCACAGAACTTTTGGAAGGTGGTTCACTTCAGAAAAACTTGAACAGCATCTATCCAATGACTTTAGATTTGGAACAATCTTTAAGTTTTGCTCTGGACATTTCTCAAGCTATGGAGTGTTTGCATGCAAATGGCATCATTCACCGTGATCTGAAGCCTAGTAATTTACTTCTAACGAAAGACAAGAAGCTTGTTAAACTTGCTGATTTTGGGATAGCTAGAGAGGATATATGTGATGAGATGACTTGTGAGGCTGGTAGTTACCGATATATGGCTCCTGAGTTGTTCAGCAAAGATCCACTTCCAAAGGGAGTAAAGAAATTCTATGATCGCAAGGCAGATGTCTACAGCTTCGCAATAGTTCTGTGGTCCTTGATCAAAAACCAAATTCCATTTAAAGAAAGGGAAAATTTGATGGCAGCATATGATACAGCAAACAACAAAAGGCCAAGTTTGGATGAGTTTCCACAACATCTACTTCCCCTCGTGCAATCCTGCTGGGCAGAAGACCCAAAACAGCGACCAGAATTCACGGAGATCACTGAAACACTGACAATGTTTCTCCAACATTGTTACTCAACAAGGACTACACTTGCCAGCATAACTGAGATTGAAGAAATCGATAGTAACAGTGAAGAATCATGTCCAAAAATACGGGCCAAAGGCCCAAAGTCTGTGAAAAACATTTCGATACATGATCATGGGACTATAATAAAACCCAAGGACCGCATAAAGTGTGAGTTTGAGTCTCTGAGGGGAGAACAGAACCCCTACTCTGACACAGCGGAAAGCAAGCCAAAAAAGAAAAGCAAGCTCAAGAGTTTACTCAAGTGCTTTCGTTGTTCCTTTGGCATTTGA	1206	0.4046	MMIIVQITYLLYLLTFDNVAADFDDGFVFDIDPSLLVDHDKLTIGDMIGEGSHSIVYKGWYEDHPVAIKVILPERTRDATPECKAKFQREVNLISRIKHKNIVKFIGASVEPSMVIITELLEGGSLQKNLNSIYPMTLDLEQSLSFALDISQAMECLHANGIIHRDLKPSNLLLTKDKKLVKLADFGIAREDICDEMTCEAGSYRYMAPELFSKDPLPKGVKKFYDRKADVYSFAIVLWSLIKNQIPFKERENLMAAYDTANNKRPSLDEFPQHLLPLVQSCWAEDPKQRPEFTEITETLTMFLQHCYSTRTTLASITEIEEIDSNSEESCPKIRAKGPKSVKNISIHDHGTIIKPKDRIKCEFESLRGEQNPYSDTAESKPKKKSKLKSLLKCFRCSFGI	401

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4147g00084	401	ProSitePatterns	Protein kinases ATP-binding region signature.	48	69	IPR017441	GO:0005524
	Gabi4147g00084	401	FunFam	Kinase suppressor of Ras 1	31	121	-	-
	Gabi4147g00084	401	PRINTS	Tyrosine kinase catalytic domain signature	156	174	IPR001245	GO:0004672\|GO:0006468
	Gabi4147g00084	401	PRINTS	Tyrosine kinase catalytic domain signature	271	293	IPR001245	GO:0004672\|GO:0006468
	Gabi4147g00084	401	PRINTS	Tyrosine kinase catalytic domain signature	118	131	IPR001245	GO:0004672\|GO:0006468
	Gabi4147g00084	401	PRINTS	Tyrosine kinase catalytic domain signature	229	251	IPR001245	GO:0004672\|GO:0006468
	Gabi4147g00084	401	SUPERFAMILY	Protein kinase-like (PK-like)	35	316	IPR011009	-
	Gabi4147g00084	401	SMART	serkin_6	42	303	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4147g00084	401	Gene3D	Phosphorylase Kinase; domain 1	32	122	-	-
	Gabi4147g00084	401	Gene3D	Transferase(Phosphotransferase) domain 1	123	345	-	-
	Gabi4147g00084	401	CDD	STKc_MAP3K-like	48	300	-	-
	Gabi4147g00084	401	ProSiteProfiles	Protein kinase domain profile.	42	304	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4147g00084	401	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	162	174	IPR008271	GO:0004672\|GO:0006468
	Gabi4147g00084	401	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	38	300	-	-
	Gabi4147g00084	401	Pfam	Protein tyrosine and serine/threonine kinase	42	300	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4147g00084	Gabi-Chr4147	706930	718611	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4147g00084	24	309	MAP Kinase Kinase Kinase	AT5G66710	55.749	4.45e-111	330

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Gabi4147g00084		PK_Tyr_Ser-Thr	8.7e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4147g00084	-		K04427	gmx:106796450	407.912