Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4147g00075 ATGCCGGTTGATTTGGACAATGTTTCCACAGCTTCAGGGGAAGCTAGCGTGTCTTCCTCTGGCAATCAGACAGTACCTCCAAAATCCGCTACAAAGAAAAAACGAAACCTTCCAGGAATGCCAGATCCAGATGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTTATGGCCACGAACCGATTCGTGTGTGAAATTTGCAACAAAGGGTTTCAGAGGGATCAGAATCTTCAGCTTCATCGACGGGGTCACAATCTGCCATGGAAGCTTAGGCAGAGGTCAAGCAAGGAGGTGAGGAAAAGGGTGTACGTTTGTCCCGAGCCAACCTGTGTTCATCATGATCCTTCAAGAGCTTTAGGTGATCTCACCGGGATAAAGAAGCATTTCTGCAGAAAACACGGCGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCTAAGATTTGCGGTACCAGAGAGTATAAATGCGATTGTGGGACTCTGTTTTCAAGGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCGTTAGCAGAGGAAAGTGCAAGATCTCAGACTCAGACTCCTCCAAAGGCTAGTTCAGAGTCAGATTCGAAAGTTGTAACCTGTGATTCATCTCCTCCGGCTGCTCCGCCACCACCGTCGCTACTACCTCCCCATCCTGCCCCGCCAGTTGCTACTTCTCAGTCAAACAGTGTCGTACCATCTGCTTTGCAGACGCAAAATCAAGAGTTGCCAGAAAATTCCCCAAAAATCATAGAGGAACCGCAGGCCAATACTGCTATGAATGGGAGCTGTAGCAGCAGCACCAGCTCAACAAGCAATAGCAATGGTGGTACTAGCAGCAGTGTATTTGCAAGCTTGTTTGCTTCATCAACCCCATCAGGAAGCCTCCAATCTCAAACACCAGCATTCACTGACCTAATTAGGGCCATGGGACATCCAGATCGTCCAGCAGATCTCACAGGGCCAGGGCTTTCATCTTCGGAGCCCATTTCTCTGTGCCTCGCCACTAATCAAGGGTCATCCATTTTTGGAACAGGAGGACAGGAGCGCCGTCAGTATGCTCCACCACCACAGCCGGCCATGTCTGCCACTGCATTGCTGCAGAAAGCTGCTCAAATGGGTGCAGCTGCAACAAATGCTTCATTGCTTCGCGGGTTAGGCATAGTGTCATCTGCTGCTTCATCCTCACCAGGTCAGCAAGATAGTTTGCAATGGGGTCAGCGGCCAGTAGAACCAGAGGGTGCCTCAGTTCCTGCAGGGCTTGGACTTGGGCTTCCCTGTGATGGCGGCTCCGGACTAAAGGAGTTAATGATGGGGACTCCCTCCATCTTTGGTCCAAAGCAGACCACCCTTGATTTTCTCGGGTTGGGGATGGCTGCTGGGGGCTCCCCTGGTGGAGGCTTATCTGCACTCATCACCTCTATCGGTGGCGGTCTGGATGTCACTGCTGCAGCGGCATCCTTTGGTGCAGGAGAGTTCTCTGGCAAAGATATTGGGAGGAACACTTGA 1548 0.5078 MPVDLDNVSTASGEASVSSSGNQTVPPKSATKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSQTQTPPKASSESDSKVVTCDSSPPAAPPPPSLLPPHPAPPVATSQSNSVVPSALQTQNQELPENSPKIIEEPQANTAMNGSCSSSTSSTSNSNGGTSSSVFASLFASSTPSGSLQSQTPAFTDLIRAMGHPDRPADLTGPGLSSSEPISLCLATNQGSSIFGTGGQERRQYAPPPQPAMSATALLQKAAQMGAAATNASLLRGLGIVSSAASSSPGQQDSLQWGQRPVEPEGASVPAGLGLGLPCDGGSGLKELMMGTPSIFGPKQTTLDFLGLGMAAGGSPGGGLSALITSIGGGLDVTAAAASFGAGEFSGKDIGRNT 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4147g00075 515 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Gabi4147g00075 515 MobiDBLite consensus disorder prediction 9 30 - -
Gabi4147g00075 515 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Gabi4147g00075 515 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Gabi4147g00075 515 MobiDBLite consensus disorder prediction 217 236 - -
Gabi4147g00075 515 FunFam protein indeterminate-domain 12-like 40 108 - -
Gabi4147g00075 515 Gene3D Classic Zinc Finger 115 196 - -
Gabi4147g00075 515 SMART c2h2final6 102 132 IPR013087 -
Gabi4147g00075 515 SMART c2h2final6 61 83 IPR013087 -
Gabi4147g00075 515 SMART c2h2final6 137 157 IPR013087 -
Gabi4147g00075 515 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 473 IPR031140 -
Gabi4147g00075 515 MobiDBLite consensus disorder prediction 237 291 - -
Gabi4147g00075 515 MobiDBLite consensus disorder prediction 1 43 - -
Gabi4147g00075 515 MobiDBLite consensus disorder prediction 404 432 - -
Gabi4147g00075 515 MobiDBLite consensus disorder prediction 191 214 - -
Gabi4147g00075 515 MobiDBLite consensus disorder prediction 404 419 - -
Gabi4147g00075 515 MobiDBLite consensus disorder prediction 191 291 - -
Gabi4147g00075 515 Gene3D Classic Zinc Finger 41 107 - -
Gabi4147g00075 515 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4147g00075 Gabi-Chr4147 634015 637837 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4147g00075 1 515 IDZ Gene Family AT5G66730 60.335 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4147g00075 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4147g00075 K25869 - gmx:100806404 818.535