Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4147g00054 ATGTCTTCGTCTCCTCATAACTCTTCCCCTGATAACGCTACACCTGATAACGCTACACCCGATAACAGTACCCCTGATGACTCATCATCACCACCACCTTCACCACCTTCGCAGTCACCACCACCGCCATCCTCAACCCCCCCTCCAACGCCACCCTCTTCTCCACCACCTACACCAAACAATCCATCCCCACCATCACCCAATGCGGCCTCTCAGCCGCCGCCTTCTCCCCCAGTATCGGGCCGTTCTCCTCCCTCACCACCACCTCCGCACAAGTCAATAACAGCCACACCACCACCCCCTCGAAATTCTGATAGCAGTGATGATAGCAGTAAGGCAATAGTTGGAGCAGTGCTTGGTGTAGGGAGCGTTCTTCTTATTCTCGTCATCGTTTGCGTTATTTGCTCAAGGAAAAAGAAAAGAAAGCAAATGTACTATTATGGAGATCGACCATCCCATGGAAAAGGGAGTAACTACTACAACAGCGGGCAGCATCCCAATTATTATGGTGGTCATCAGAATGGGATGGACCATGTTGTTAGGGTACAAAATGGAATGGGTCCTAACGGTGGAGGGTGGGCTGCTCCACCACCACCTCCTCCACTAATGAACAGTGCTGACATGAGCTCCAATTACTCAACAGGACCACCCCCTCTGCCTCCTCCATCACCAAGCCTTGCTCTAGGCCTCAAGGGTGGCACTTTCACTTATGAGGAATTAGCAGCTGCTACTAACGGATTCACTGATGCCAATCTGATAGGACAGGGTGGCTTTGGTTATGTTCATAAAGGTGTTTTGCCTAGTGGAAAGGAAGTGGCAGTTAAGAGTCTTAAATCTGGTAGCGGGCAAGGAGAGCGAGAGTTCCAAGCTGAGATTGACATCATTAGTCGTGTTCATCATCGCCATCTTGTGTCACTTGTTGGATACTGTATTTCTGGTGGACAGAGAATGTTGGTCTATGAATTTATTCCCAATGACACTTTAGAACATCACCTTCATGGGAAGGGTCAACCTACAATGGATTGGCCTACTAGAATGCGGATTGCAATAGGATCCGCCAAAGGGCTTGCCTATCTTCATGAGGACTGTCATCCTCGCATAATCCATCGTGATATCAAAGCTGCGAATGTCCTTATTGATGATAGCTTCGAAGCAAAGGTTGCTGATTTTGGATTGGCTAAGTTGACTTCTGATAATAACACTCATGTATCAACTCGTGTCATGGGAACGTTCGGGTACCTAGCCCCTGAATATGCATCAAGTGGAAAATTGACAGAGAAATCTGATGTTTTTTCATTTGGAGTCATGCTATTGGAACTCGTAACTGGGAAGCGACCCGTGGATCACACAAATACCATGGACGACAGCTTAGTGGACTGGGCTCGACCACTACTTACTCGTGGACTTGAGGAAGATGGCAACTTTGGAGAGTTGGTGGATCCATTTTTGGAAGGAAACTACAATCCTCAAGAAATGACAAGGATGGCAGCTTGCGCTGCTGCTAGCATTCGCCACTCTGCCAAGAAGCGTGCAAAAATGAGCCAGATTGTAAGAGCATTGGAAGGAGATGTGTCACTGGACGATTTGAAGGATGGGATGAAGCCAGGGTATAGCGCTGTTCACACTTCTTCATCAGGGAGCTCAGAGTATGACACAATGCAATACAATGCTGATTTGCAAAAGTTCAGAAAAGCAGTGTTTTCGAGCCAGGAATTTGGTGCCAGCAGCAGCTCTAGTGGCGATATGAGCCAGACCCCAAGGCAGAAGCAGCAGCCCCAGCTTTAG 1785 0.4824 MSSSPHNSSPDNATPDNATPDNSTPDDSSSPPPSPPSQSPPPPSSTPPPTPPSSPPPTPNNPSPPSPNAASQPPPSPPVSGRSPPSPPPPHKSITATPPPPRNSDSSDDSSKAIVGAVLGVGSVLLILVIVCVICSRKKKRKQMYYYGDRPSHGKGSNYYNSGQHPNYYGGHQNGMDHVVRVQNGMGPNGGGWAAPPPPPPLMNSADMSSNYSTGPPPLPPPSPSLALGLKGGTFTYEELAAATNGFTDANLIGQGGFGYVHKGVLPSGKEVAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYCISGGQRMLVYEFIPNDTLEHHLHGKGQPTMDWPTRMRIAIGSAKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTSDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELVTGKRPVDHTNTMDDSLVDWARPLLTRGLEEDGNFGELVDPFLEGNYNPQEMTRMAACAAASIRHSAKKRAKMSQIVRALEGDVSLDDLKDGMKPGYSAVHTSSSGSSEYDTMQYNADLQKFRKAVFSSQEFGASSSSSGDMSQTPRQKQQPQL 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4147g00054 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 367 379 IPR008271 GO:0004672|GO:0006468
Gabi4147g00054 594 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 120 571 IPR047117 -
Gabi4147g00054 594 MobiDBLite consensus disorder prediction 186 221 - -
Gabi4147g00054 594 Gene3D Transferase(Phosphotransferase) domain 1 323 531 - -
Gabi4147g00054 594 SUPERFAMILY Protein kinase-like (PK-like) 224 520 IPR011009 -
Gabi4147g00054 594 ProSiteProfiles Protein kinase domain profile. 247 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4147g00054 594 PRINTS Proline rich extensin signature 35 51 - -
Gabi4147g00054 594 PRINTS Proline rich extensin signature 55 67 - -
Gabi4147g00054 594 PRINTS Proline rich extensin signature 69 90 - -
Gabi4147g00054 594 PRINTS Proline rich extensin signature 19 31 - -
Gabi4147g00054 594 Gene3D Phosphorylase Kinase; domain 1 227 322 - -
Gabi4147g00054 594 MobiDBLite consensus disorder prediction 26 97 - -
Gabi4147g00054 594 FunFam Proline-rich receptor-like protein kinase PERK1 323 531 - -
Gabi4147g00054 594 MobiDBLite consensus disorder prediction 572 594 - -
Gabi4147g00054 594 SMART serkin_6 247 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4147g00054 594 Pfam Protein tyrosine and serine/threonine kinase 251 452 IPR001245 GO:0004672|GO:0006468
Gabi4147g00054 594 MobiDBLite consensus disorder prediction 1 110 - -
Gabi4147g00054 594 ProSitePatterns Protein kinases ATP-binding region signature. 253 275 IPR017441 GO:0005524
Gabi4147g00054 594 FunFam proline-rich receptor-like protein kinase PERK1 225 322 - -
Gabi4147g00054 594 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4147g00054 Gabi-Chr4147 501312 505510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4147g00054 68 589 Trihelix Transcription Factor Family AT1G70460 48.066 5.29e-154 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Gabi4147g00054 PK_Tyr_Ser-Thr 7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4147g00054 - - gmx:100777163 764.607