Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4147g00047 ATGGAAGCGAAGGACCAAATGAAGAACGACGATCCTGCAGCAGAGTCTCCGACTTCTGTCCTTGAAGAAGAGGATGCTTGCGGTGAGAAAGGGGAAGTTAAGTTGGAGGAAGAGGTGCTTGCAGATATTGAAGATGATGGGTCCTCGCTTCTACCAAGTACAATGGCAAAGGAGGAAGTGAAGTTGCTCAAAGCTAGGATCCAGGAAGATGAGGCGCAGTGTGAGGAGGCACCAAACCTCAATGACACTCAGTTTAACAAATTGGATGAGCTTTTAACGCAAACTAAACTATACTCCGAGTTTCTGCTGGAGAAGATGGATGACATCACACTTACTGGGGGTGAACAAGAGAATGAGGGTGTGGAAGAGAGCAAGCCAGCTGCAAAGAAGGGCCGTGGCTTCAAAAGAAAAACGGCCTCACAGTATAATACTAGGAAGGCCAAAAGGGCTGTTGCTGTCATGCTTACAAGATCTAAAGAAAGTGAGAGGACTGAAGATATTGACATGAGTGAGGAAGATAGAGTTGAGAAAGAGCAGAAGGAGCTTATGCCTTTACTGACGGGTGGAAAATTGAAGTCTTATCAACTAAAGGGTGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGAATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACGATTGGGTTTCTCTCACATCTGAAAGCGAAAGGTCTGGACGGGCCATACATGATAATTGCTCCTCTATCTACCCTCTCGAATTGGGTGAATGAGATTTCTAGGTTTGCACCATCACTCCCTGCTATTATCTACCACGGTGACAAGAAACAGAGAGATGAAATCCGAAGGAAACACATGCCTAGAACGATTGGACCAGAATTTCCCATAGTAATAACTTCTTATGAGGTTGCTTTAAATGATGCTAGGAAATGTTTCAGGGCATACCATTGGAAATATCTTGTTGTTGATGAGGGACACAGGCTCAAAAACTCAAAATGCAAATTAGTGAAGATGTTGAAATGCATAACTGTAGAAAATAAGCTTCTTCTAACTGGGACTCCTCTACAGAATAACTTGGCGGAGCTATGGTCGCTGTTAAACTTCATTTTACCTGATATTTTTGCATCGCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGCAAGTGCAGTAATGGGGCAACCAAAGAAGAAATGGAAGAGAAAAGAAGGGCCCAAGTAGTAGCCAAGCTTCATGGTATTCTTCGACCTTTCCTTCTGCGTAGGATGAAGTCTGATGTTGAGCTGATGTTGCCACGGAAAAAAGAGATCATTATCTACGCAAACATGACTGAGCATCAGAAGAATTTGCAGGATCATTTAGTTAATGAGACGATGGGGAAATATTTAAAAGAAAAGTTGGCAATTGGTAAGATTTGTTTCCAGAAGCTCAATAATTTGGTTATTCAACTTAGGAAGGTCTGCAACCATCCTGACCTTGTAGATTCAATCTATGATGGTTCATATGAATATCCTCCTCTAAATGAGATAATTGAACAATGTGGAAAATTTCGTTTGCTTGACCGATTGTTGGAACAGTTATTTGCACGGAATCACAAAGTTCTGATCTTCAGTCAGTGGACTAAAGTGTTAGATATAATGGATTATTATTTTAGTGAAAAGGGCTTTGAAGTTTGCAGGATTGATGGTAGTGTGAAACTGGATGATAGGAGACGACAGATCCAGGACTTCAATGATGTAAACAGCAATTGCAGAATCTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATCAACCTTACTGCAGCTGACACTTGCATTCTATATGACAGTGACTGGAATCCTCAGATGGATTTACAGGCCATGGATAGATGTCATAGGATAGGTCAAACAAAGCCTGTTCATGTTTACAGGCTCTCAACTGCTCTATCTGTAGAGGGTCGTATGTTGAAAAGAGCTTTCAGTAAGTTGAAACTTGAGCATGTGGTGATTGAGAAAGGACAGTTTCATCAAGAACGTTCGAAGCCTGTCAACACGGATGAAATGGAGGAAGAGGATGTTTTAGCATTGCTTCGAGATGAAGAAACAGCCGAAGATAAAACGTTACAAACAGATATCAGTGATGAAGACCTGGAGAAGCTTTTGGATCGCAGTGATCTTGTTGTCAATAACTCAAATGACGATAAAAACTTCAAAGATCCAGTCAGTTCCTTTCCCCTTAAAGGGCCTGGGTGGGAGGTGGTGATTCCAACTGCGACTGGTAGCATGCTTTCTACTCTTAACAGCTAA 2286 0.4173 MEAKDQMKNDDPAAESPTSVLEEEDACGEKGEVKLEEEVLADIEDDGSSLLPSTMAKEEVKLLKARIQEDEAQCEEAPNLNDTQFNKLDELLTQTKLYSEFLLEKMDDITLTGGEQENEGVEESKPAAKKGRGFKRKTASQYNTRKAKRAVAVMLTRSKESERTEDIDMSEEDRVEKEQKELMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKAKGLDGPYMIIAPLSTLSNWVNEISRFAPSLPAIIYHGDKKQRDEIRRKHMPRTIGPEFPIVITSYEVALNDARKCFRAYHWKYLVVDEGHRLKNSKCKLVKMLKCITVENKLLLTGTPLQNNLAELWSLLNFILPDIFASLEEFESWFNLSGKCSNGATKEEMEEKRRAQVVAKLHGILRPFLLRRMKSDVELMLPRKKEIIIYANMTEHQKNLQDHLVNETMGKYLKEKLAIGKICFQKLNNLVIQLRKVCNHPDLVDSIYDGSYEYPPLNEIIEQCGKFRLLDRLLEQLFARNHKVLIFSQWTKVLDIMDYYFSEKGFEVCRIDGSVKLDDRRRQIQDFNDVNSNCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTALSVEGRMLKRAFSKLKLEHVVIEKGQFHQERSKPVNTDEMEEEDVLALLRDEETAEDKTLQTDISDEDLEKLLDRSDLVVNNSNDDKNFKDPVSSFPLKGPGWEVVIPTATGSMLSTLNS 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4147g00047 761 Gene3D - 427 731 IPR027417 -
Gabi4147g00047 761 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 371 IPR014001 -
Gabi4147g00047 761 PANTHER SNF2/RAD54 HELICASE FAMILY 59 716 - -
Gabi4147g00047 761 Coils Coil 53 73 - -
Gabi4147g00047 761 SMART helicmild6 544 628 IPR001650 -
Gabi4147g00047 761 MobiDBLite consensus disorder prediction 1 32 - -
Gabi4147g00047 761 Pfam Helicase conserved C-terminal domain 517 628 IPR001650 -
Gabi4147g00047 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 421 IPR027417 -
Gabi4147g00047 761 SMART ultradead3 187 382 IPR014001 -
Gabi4147g00047 761 CDD SF2_C_SNF 504 638 - -
Gabi4147g00047 761 FunFam Chromatin complex subunit A 106 431 659 - -
Gabi4147g00047 761 MobiDBLite consensus disorder prediction 113 139 - -
Gabi4147g00047 761 FunFam ATP-dependent DNA helicase DDM1 185 430 - -
Gabi4147g00047 761 Pfam SNF2-related domain 194 493 IPR000330 GO:0005524|GO:0140658
Gabi4147g00047 761 Gene3D - 192 422 IPR038718 -
Gabi4147g00047 761 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 518 674 IPR001650 -
Gabi4147g00047 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 715 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4147g00047 Gabi-Chr4147 473680 480023 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4147g00047 177 649 RAD5 or RAD16-like Gene Family AT3G16600 23.529 1.41e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi4147g00047 SNF2_N 1.1e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4147g00047 K19001 - gmx:100777687 1290.79