Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4147g00030 ATGCATCGTTCTTGCAGTGGCTCCCAGGGGCACGTGATGGGACCCTGTACATGTGGTATGTTTCATAGTCAAACCAATTCTTTCTCTATGCTATTCTCCATGCCCAACCACAAACCCTATGATGAATCAGAAATGTATTCCTTCACTCCTTCTTCCTCTTCCGTGGATTGTACTCTCTCCCTTGGAACCCCATCCACCCGTTACACCGAAGATGAAGAGAAACGAACCCGCCATGAACGTCGCTCTGTCTCAAACTTTTGCTGGGATTTACTACAACCCAAACATAACCCTCAACCCCAAACCAAGACCAACCGAGGAAGCAATAATAGCAACTCCACCAACGATCCTCTCCTCGCTCGTCGCTGCGCCAACTGTGACACCACTTCAACACCCCTTTGGAGGAATGGCCCTCGAGGCCCAAAGTCACTCTGCAATGCCTGTGGGATTAGATTCAAGAAGGAAGAGAGAAGAGCAAGTGCTGCTGCCGCTGCCACACCCGCGGCGGTCTCTGGCGGCGTAATGGAGTCGGCGCAGATGTACAGCCACCACAACAACTCATGGTACGCACACCAGCAGAGCCAGAAGATGCAGTGCCTCTCGCCGGCGATGAGCAACGAGTTTCGCTTCGTGGATGACGGTGATCAAGACTCCGACAACGGCATTCCCTTTCTCTCTTGGAGACTCAACGTCACAGATAGAACGAGCCTCATTCACGACTTTACAAGATGA 729 0.5185 MHRSCSGSQGHVMGPCTCGMFHSQTNSFSMLFSMPNHKPYDESEMYSFTPSSSSVDCTLSLGTPSTRYTEDEEKRTRHERRSVSNFCWDLLQPKHNPQPQTKTNRGSNNSNSTNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAAATPAAVSGGVMESAQMYSHHNNSWYAHQQSQKMQCLSPAMSNEFRFVDDGDQDSDNGIPFLSWRLNVTDRTSLIHDFTR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4147g00030 242 MobiDBLite consensus disorder prediction 88 117 - -
Gabi4147g00030 242 Pfam GATA zinc finger 122 156 IPR000679 GO:0006355|GO:0043565
Gabi4147g00030 242 ProSiteProfiles GATA-type zinc finger domain profile. 116 152 IPR000679 GO:0006355|GO:0043565
Gabi4147g00030 242 SMART GATA_3 116 170 IPR000679 GO:0006355|GO:0043565
Gabi4147g00030 242 ProSitePatterns GATA-type zinc finger domain. 122 147 IPR000679 GO:0006355|GO:0043565
Gabi4147g00030 242 PANTHER GATA TRANSCRIPTION FACTOR 18 11 242 IPR044272 GO:0003700|GO:0009908
Gabi4147g00030 242 Gene3D - 118 197 IPR013088 GO:0006355|GO:0008270
Gabi4147g00030 242 CDD ZnF_GATA 121 153 IPR000679 GO:0006355|GO:0043565
Gabi4147g00030 242 MobiDBLite consensus disorder prediction 89 117 - -
Gabi4147g00030 242 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 119 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4147g00030 Gabi-Chr4147 306514 307356 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4147g00030 17 242 C2C2-Gata Transcription Factor Family AT3G50870 44.755 3.18e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi4147g00030 GATA 5.8e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4147g00030 - - gmx:100790571 375.17