Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4147g00025 ATGGAAATGAGAGTCCAAGACAAGGAAATAGAGATGCCCACCACTTTAGGTTATACTAATCTTCCCAATAGAGATTCTTCTTCTTCTTCTTCCAAGCTGTCTTCTGCAAATCTAGCTTCAACGTTAGGGGAAAGAAGTACTGATCAACCTTCTCAAAATCGCACATTAATCTTCAATGATCCACCTCAAACTTCACACCATCATCATCATCATCATTATCCACCTCCTCTTGCACCCACTCATATTCCTCAAGCTCAAAGACCCACTACAGATCCAGATCTAAGCTCTTCTCCTATTGCAACAACAAGCACCCCAATTGCAAGTGGATCAAACCCCACAACAACAACAACAACACCACAACAGACAACTATTGCAACAACAATCTTAAACCCGTTAATCAGGTACCGAGAATGTCTGAGGAACCACGCCGCCAGCATGGGGAGCCACGTGGTAGATGGGTGTGGCGAATTTATGCCAAGTGGAGAAGAAGGAACACCAGAATCACTAAGATGCGCTGCTTGTGAATGCCACCGCAACTTTCATCGAAAAGAGGTTGAAGGTGAACAACCCCAACATGTTCCTAATTATCATAACTATTATCCCAACAAACACAACGGTCATATTCAATTCCCTCAGCATCATCATCATCATAGATTTTCACATGTGGTGACCACCACCCCAACAGCAGGCCTAATTCCGCCGGTGATGGTGGCGTTTGGAGGCGGCGCCGCTGAGTCCTCCAGCGAAGATCTCAACATGTTTCAGTCTAATACAGGAGCACAGTTATCAGTGCAGCCACCACTATCAAAGAAGAGGTTCAGGACAAAATTCTCCCAACAACAGAAGGATAAGATGATGGAGTTTGCTGAGAAGCTGGGATGGAAGATCCAGAAACATGATGAACAGGAAGTGCAGCAATTTTGTTCTCAAGTTGGTGTCCAAAGACAGGTTTTCAAGGTTTGGATGCACAATAACAAGCAAGCAATGAAGAAGCATCAAATCCATTTTTTCCTACTGGGCAAGACTCGAGAGAGAAATTAA 1041 0.4419 MEMRVQDKEIEMPTTLGYTNLPNRDSSSSSSKLSSANLASTLGERSTDQPSQNRTLIFNDPPQTSHHHHHHHYPPPLAPTHIPQAQRPTTDPDLSSSPIATTSTPIASGSNPTTTTTTPQQTTIATTILNPLIRYRECLRNHAASMGSHVVDGCGEFMPSGEEGTPESLRCAACECHRNFHRKEVEGEQPQHVPNYHNYYPNKHNGHIQFPQHHHHHRFSHVVTTTPTAGLIPPVMVAFGGGAAESSSEDLNMFQSNTGAQLSVQPPLSKKRFRTKFSQQQKDKMMEFAEKLGWKIQKHDEQEVQQFCSQVGVQRQVFKVWMHNNKQAMKKHQIHFFLLGKTRERN 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4147g00025 346 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 135 184 IPR006456 -
Gabi4147g00025 346 MobiDBLite consensus disorder prediction 83 120 - -
Gabi4147g00025 346 SUPERFAMILY Homeodomain-like 263 332 IPR009057 -
Gabi4147g00025 346 Pfam ZF-HD protein dimerisation region 133 185 IPR006456 -
Gabi4147g00025 346 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 111 327 - -
Gabi4147g00025 346 NCBIfam homeobox domain, ZF-HD class 270 327 IPR006455 -
Gabi4147g00025 346 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 134 185 IPR006456 -
Gabi4147g00025 346 Gene3D - 256 331 - -
Gabi4147g00025 346 FunFam Zinc-finger homeodomain protein 2 257 331 - -
Gabi4147g00025 346 MobiDBLite consensus disorder prediction 16 62 - -
Gabi4147g00025 346 MobiDBLite consensus disorder prediction 1 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4147g00025 Gabi-Chr4147 264511 266781 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4147g00025 71 334 ZF-HD Transcription Factor Family AT2G18350 45.956 1.36e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gabi4147g00025 ZF-HD_dimer 5.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4147g00025 - - ccaj:109810490 363.614