Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4147g00020 ATGGGAACTGATACTGGTGAAGAGTTGGAGGCATTACCAAATCCTCGCTCCTTTAAGGTACATAGTAGAATGTGCGTAGAACTCATGAAATTAGTGGATAGAATCTTAAGGATATTTCCAAACATTGAGGCGGCACGGCCGCGAAGCACATCGGGAATAGAGTCCCTGTGTTTGCTGAACAACGCAATTGATAAAGCCAAACTACTTCTGCAATATTGCTCCGATTGCAGCAAACTGTACCTGGCCGTGACAGGGGATACAATACTCTCAAGATGCCAAAAGGCAAAAAGATCATTAGAACAAAGCTTAAACCAGATTCAGGATATGGTTCCAGTTATGTTGGCTGTAGAGGTTTCTAGAATAATTGATGATCTTGAATGTGCAACATTTGTTCTTGACTCTGCTGAAGAAGAGGCTGGGAGGGTTGTGAGAGAGTTGCTTCAGCAAAGCACTTCAACCTCAGATTCAGTGGAGAATTCTGAAGTTAAAGCTCTTCAATTTGCAGCACCAAGACTTAATATCACATCCCCGAAGGCCATCTTAATAGAGAAACGATCTATTAAGAAGTTGCTAGATAAAATTGGACAAAATGACCAGAAAAAGAAGATGATCTTGAGATATCTTCTCTATCTACTGAAAAAGCATGGAAACCTCATCGTGGGAGAACAAATGGAGGTCTATTCTCGTAGTGAAGAACCTATTGCAACAGAGTACTCTAGTAACGATTCTCTACGAAGTCATCATGTTCAGTCAGAACCATGCTTGAACTATGGTCAGTATAGAGCTGATATCAGTGAGTTGGGTAGAGTTACACCCCCTGATGAATATAAGTGCCCAATATCGTCAAGGTTGATGTATGATCCTGTTATCATTGCTTCTGGAGTAACATATGAAAGGATGTGGATACAAAAGTGGTTTGAAGAAGGTAAGGATATATGTCCAAAAACCAAAAAGAAGCTAACCCATATGACATTGACTTCAAACATTGTCATGAAGGACTTAATATCAAAGTGGTGCAGAAATAATGAAGTGTCCATTCCTGACCCGAGTAGGCAAGCAGAAGATGTTCACTCATGGGAAGCTTCCAACACTTCCATTAAGAGTTTAGGAAGTTATATCAATGATTTTCACTTACCAATGGATCTTAGTAACATTTCACTTGGATCGTTGGATACTAGTTATAGTTCAGATGCCTCCCATGGGAAGACTACTCGTGGCTTAAATTTGATGTTGAACAAGACTAGTGACAACTCCCACAAACATCCAACTCATGCAGAGATACATGATGCAGATTTGATGCTCTTGTCTAAACTCCATGATCTTCAATGGGATTCTCAATGCAAAGTCATTGAAGATATGAAAGATCATGTGAAAAGCAATTACCAATCTTTTGTTTCTGCGTCACCTGAGAATTTCATTGAACCACTCGTCAGATTTCTGAGCAATGCTAATGATCTGCATGACTTAAAAGCGCTGAGAGCAGGAACTCAGCTCCTGTTGGAATTTGTGAACAACTGCAGAAATGGTGTGACTAATTTAGGTGAAGATACATTCATTATGTTGGCAAGTTTTCTTGATTCAGAAGTGATAGGAGAAGCTCTTGCCATAATGGAAGAACTGTCTGGGGATGGGTTTAGTAAAGCTAAAATTGCAGCATCCAGTGCACTCACTTCTGTTTTTAATGTACTTGATTCTGATAATAAAGAGTTCCAACAACAAGCTATTAGAATCATGTACAATCTGTCCTTCCACGGTGAAGTTTGTCCCCACATGCTATCTCTCAAGTGCATCCCGAAATTGCTGGCATTTTTTAAAGATAGGGCCCTTTTGAGATACTGTATATATATCTTGAAAAATCTTTGTGGTACTGAAGAGGGTAGGAATTCTGTTGCTGAAACTAAAGGATGCATATCTTCTGTTGTTGAAATACTTGAGAAAGGCAGTAATGAGGAACAAGAACATGCACTGGCTGTTCTAGTCTCTTTATGCTCTCAACGTGAGGATTATTGTCGGTTGGTTATGAATGAAGATATTTTCACTCCTCTTTTCTATATCTCCCAGAATGGAAATGATAAAGGAAAGGTAAATGCGTTGGAACTGATCCGTCTCTTGAGAGATATTGACTGTGTTGAGAATAAAGATTGCTCTGAACCAAATATCAACAACACTTCTCGGGATTCTAACAGCCACCCTGAGGAAAATAAATCATCAAAGAGATCCACATTTCTGAAGAAACTATCACCTTTTTCAAAATCCAGTTCACATGCATCAAAATCCAAGAGATGA 2286 0.3928 MGTDTGEELEALPNPRSFKVHSRMCVELMKLVDRILRIFPNIEAARPRSTSGIESLCLLNNAIDKAKLLLQYCSDCSKLYLAVTGDTILSRCQKAKRSLEQSLNQIQDMVPVMLAVEVSRIIDDLECATFVLDSAEEEAGRVVRELLQQSTSTSDSVENSEVKALQFAAPRLNITSPKAILIEKRSIKKLLDKIGQNDQKKKMILRYLLYLLKKHGNLIVGEQMEVYSRSEEPIATEYSSNDSLRSHHVQSEPCLNYGQYRADISELGRVTPPDEYKCPISSRLMYDPVIIASGVTYERMWIQKWFEEGKDICPKTKKKLTHMTLTSNIVMKDLISKWCRNNEVSIPDPSRQAEDVHSWEASNTSIKSLGSYINDFHLPMDLSNISLGSLDTSYSSDASHGKTTRGLNLMLNKTSDNSHKHPTHAEIHDADLMLLSKLHDLQWDSQCKVIEDMKDHVKSNYQSFVSASPENFIEPLVRFLSNANDLHDLKALRAGTQLLLEFVNNCRNGVTNLGEDTFIMLASFLDSEVIGEALAIMEELSGDGFSKAKIAASSALTSVFNVLDSDNKEFQQQAIRIMYNLSFHGEVCPHMLSLKCIPKLLAFFKDRALLRYCIYILKNLCGTEEGRNSVAETKGCISSVVEILEKGSNEEQEHALAVLVSLCSQREDYCRLVMNEDIFTPLFYISQNGNDKGKVNALELIRLLRDIDCVENKDCSEPNINNTSRDSNSHPEENKSSKRSTFLKKLSPFSKSSSHASKSKR 761
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi4147g00020 761 Coils Coil 89 109 - -
Gabi4147g00020 761 MobiDBLite consensus disorder prediction 718 761 - -
Gabi4147g00020 761 SUPERFAMILY ARM repeat 434 704 IPR016024 -
Gabi4147g00020 761 SMART Ubox_2 275 338 IPR003613 GO:0004842|GO:0016567
Gabi4147g00020 761 Gene3D - 433 717 IPR011989 -
Gabi4147g00020 761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 346 IPR013083 -
Gabi4147g00020 761 PANTHER U BOX DOMAIN-CONTAINING 22 710 - -
Gabi4147g00020 761 SUPERFAMILY RING/U-box 268 348 - -
Gabi4147g00020 761 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842|GO:0016567
Gabi4147g00020 761 Pfam U-box domain 273 343 IPR003613 GO:0004842|GO:0016567
Gabi4147g00020 761 CDD RING-Ubox_PUB 273 325 IPR045210 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi4147g00020 Gabi-Chr4147 208348 213490 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4147g00020 15 708 U-box Gene Family AT4G36550 39.062 3.01e-157 472
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4147g00020 - - gmx:100791627 1097.8