Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4147g00012 ATGGCGGTTCACGATGATCCCATGGTGGTTCCGAACCTATCTCCGCCCAATACCTACGAAGCTGTGGTCAACGGTGGCACCTTTGACCGATTGCACGACGGCCACCGCCTCTTTCTCACCGCTTCAGCGGAGTTGGCAAGGCGTCGGATTGTGATTGGAGTTTGCGAGGGGCCTATGCTGGCAAAGAAGCAGTTCGCTGAACTGATACAGCCCATTGAGGAAAGGATACATAATGTCAAGACTTTCATAAAGTCTATCAAACCAGAGTTGGAAGTGCAAGCTGTACCAATCACAGATCCGTATGGCCCTTCCATTGTGGATGAAAATTTAGAGGCTGTGATTGTAAGCAAAGAGACATTACCGGGTGGATTGGCAGTAAACAGAAAAAGAGCTGAAAGAGGCCTTTCACAGTTAAAGATTGAAGTTGTAGATTTACTCTCTGGAGAATCCGGTGAAATTAAGCTGAGTTCATCAATGTTGCGAAAGCTTGAGGCTGAAAAGGCCAAACAACAGACGTAGTTACAAAAAATTTGTTGAACCTTTTTTTGTTGGATTTTGCAAAATTTTGCAAAGATGAATGATCTGATGACTAAATCGTTCCTAAGTTATGTTGAACTGAAGAAGCACGTTCAGAAGGAACTTGAAGACGATCTTGACATTGAGGCAGGTCAACTCAACCCCATAGAAGACCATAACCTCTCTCAGTTCTTCCAAGAAGTTGAAGCAATCAAGGTTGAAATGGAAGAGATCACCAATCTCTTATTTGATCTTCAGCAACTGAATGAAGAGACAAAGTCCACTCACAGTGCCAAAGTTCTACGTGGGTTAAGAGACCGCATGGAGTCTGACATGGTTGCCGTGCTTCGCAAGGCAAAGATTATCAAGGCAAGGCTTGAGGTTCTTGATCAATCCAACATGGCCAATCGCAGCATATCAGAATCCTTCAAAGAGGGAAGCCCCGTTGATAGGACAAGATTATCTGTCACAAATGGTTTGAGGGTAAAGCTTAGGGACATGATGAATGATTTTCAGTCCTTGAGAGACAAGATTCTTTCAGATCACAAGGAAGATTTGAAGAGAAGATACTATACGGTAACTGGTGAGGTTCCCAGCGAGGAGGTCATGGAGAAGATGATTTCAGGAAGTCTCAAAGTTGAGTTTTTGGCTGGGAAAACTGAGGCTGATTTGGGTACTCAGGTTAGGCATGAGGCTGTGTTGGATATCCAGAGGAGTTTGAATAAGCTTCACCAGGTTTTTCTTGATATGGCTATTCTGGTTGAGACACAAGGAGAACACTTGGATAACATTGAGGATAATGTGGTTAATGCGGGTAACTTCATTCATGGTGGAACTAATAGTCTTTACTATGCTAACCAGATGAAGAAAAGGAACAAAAAATGGGTCTATTGGGTTTTTGCTGTGGGGTTGATCATACTGCTGGTGTGCATCATTGCAACGTTGTCTTCTTGA 1470 0.4347 MAVHDDPMVVPNLSPPNTYEAVVNGGTFDRLHDGHRLFLTASAELARRRIVIGVCEGPMLAKKQFAELIQPIEERIHNVKTFIKSIKPELEVQAVPITDPYGPSIVDENLEAVIVSKETLPGGLAVNRKRAERGLSQLKIEVVDLLSGESGEIKLSSSMLRKLEAEKAKQQTXLQKICXTFFCWILQNFAKMNDLMTKSFLSYVELKKHVQKELEDDLDIEAGQLNPIEDHNLSQFFQEVEAIKVEMEEITNLLFDLQQLNEETKSTHSAKVLRGLRDRMESDMVAVLRKAKIIKARLEVLDQSNMANRSISESFKEGSPVDRTRLSVTNGLRVKLRDMMNDFQSLRDKILSDHKEDLKRRYYTVTGEVPSEEVMEKMISGSLKVEFLAGKTEADLGTQVRHEAVLDIQRSLNKLHQVFLDMAILVETQGEHLDNIEDNVVNAGNFIHGGTNSLYYANQMKKRNKKWVYWVFAVGLIILLVCIIATLSS 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4147g00012 489 CDD SynN 233 383 IPR006011 GO:0016020
Gabi4147g00012 489 PANTHER DEPHOSPHO-COA KINASE-RELATED 37 172 - -
Gabi4147g00012 489 SMART SynN_4 228 355 IPR006011 GO:0016020
Gabi4147g00012 489 Gene3D - 229 359 - -
Gabi4147g00012 489 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 230 361 - -
Gabi4147g00012 489 FunFam Syntaxin 132 391 488 - -
Gabi4147g00012 489 Coils Coil 243 263 - -
Gabi4147g00012 489 Gene3D - 391 488 - -
Gabi4147g00012 489 Gene3D HUPs 21 171 IPR014729 -
Gabi4147g00012 489 SMART tSNARE_6 390 457 IPR000727 -
Gabi4147g00012 489 Pfam Cytidylyltransferase-like 25 141 IPR004821 GO:0003824|GO:0009058
Gabi4147g00012 489 SUPERFAMILY t-snare proteins 230 450 IPR010989 GO:0016020|GO:0016192
Gabi4147g00012 489 Pfam Syntaxin 235 430 IPR006011 GO:0016020
Gabi4147g00012 489 Coils Coil 174 178 - -
Gabi4147g00012 489 CDD SNARE_syntaxin1-like 399 454 - -
Gabi4147g00012 489 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 395 457 IPR000727 -
Gabi4147g00012 489 FunFam Phosphopantetheine adenylyltransferase 1-like 21 171 - -
Gabi4147g00012 489 SUPERFAMILY Nucleotidylyl transferase 22 167 - -
Gabi4147g00012 489 Coils Coil 180 180 - -
Gabi4147g00012 489 CDD PPAT_CoAS 22 162 - -
Gabi4147g00012 489 Coils Coil 160 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4147g00012 Gabi-Chr4147 160066 167243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4147g00012 192 489 SNARE and Associated Proteins AT2G18260 61.564 1.32e-131 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4147g00012 K08486 - cave:132188767 691.419