Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4144g00077 ATGGAAGGTATTGTTGTGAGAAGAGTCATTCCCTCGGATAATAGCTGCCTCTTTAATGCAGTTGGATATGTTATGGATCATGACCAAAACAAAGCTGCTGAGTTGAGACAGGTTATTGCTGCAACAGTAGCAAGTGATCCTGATAAATATTGTGAAGCATTTCTTGGGAAGCCAAATGCAGAGTATTGTAACTGGATTCTTGACTCTGAGAAGTGGGGAGGTGCAATTGAACTTTCAATATTAGCAGATTACTATGGACGTGAAATTGCAGCATATGATATCCAGACAACACGATGTGATTTGTATGGTCAGGAAAGTAAATATTCTGAAAGGGTGATGCTGATTTATGATGGTCTCCACTATGATGCATTAGCTATGTCTCCCTCCGAGGGAGCTCCTGAGGAGTTTGATCAGACCATATTTGCTGTACAGAAAAACAGAAGCATTGGACCTGTTGAGGGGCTTGCTCTTAATTTTGTTAGAGATCAACAGAGGAAACGGAGCTACACTGACACTGCCAGATTCACTCTGCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTCAGAAGGAGGCAATGGAGCACGCGCAAGCAACTGGTCATGTTAACTTCCAAGAATATAGATGA 627 0.4242 MEGIVVRRVIPSDNSCLFNAVGYVMDHDQNKAAELRQVIAATVASDPDKYCEAFLGKPNAEYCNWILDSEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQESKYSERVMLIYDGLHYDALAMSPSEGAPEEFDQTIFAVQKNRSIGPVEGLALNFVRDQQRKRSYTDTARFTLRCGVCQIGVIGQKEAMEHAQATGHVNFQEYR 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4144g00077 208 PANTHER HIV-INDUCED PROTEIN-7-LIKE PROTEASE 5 206 - -
Gabi4144g00077 208 Pfam OTU-like cysteine protease 12 105 IPR003323 -
Gabi4144g00077 208 Gene3D - 1 173 - -
Gabi4144g00077 208 FunFam ubiquitin thioesterase OTU1 1 173 - -
Gabi4144g00077 208 SUPERFAMILY Cysteine proteinases 8 124 IPR038765 -
Gabi4144g00077 208 CDD OTU_plant_OTU1_2-like 3 166 - -
Gabi4144g00077 208 ProSiteProfiles OTU domain profile. 5 127 IPR003323 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4144g00077 Gabi-Chr4144 564142 571239 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4144g00077 1 208 C2H2 Transcription Factor Family AT1G50670 82.212 5.39e-130 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4144g00077 K13719 - gmx:100793701 400.593