Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4144g00073 ATGAACCCGGTAACCAACAAATTGACTCCAGCAGCCAAATTGAAAAACAAAAACAAGAAAAAAATGGTGCCTATAAATGGTAGTCTATCTGCATCATTTCTAAGCAATACATTTAGTGCATTCTTATCCTCTCAATTTGAAATTCCTATTACCAACACTTCTCCAACTATGAGCAAGTGGTTTTCTGGAAAGATAGAAGCAGTAACAAGGTGTAAGGAAGTTTTTTCTTTGTGGGTTTTGGCTAGCATTGGCGGTTATGTAGTTGAGCTATTCATGAAAGCTATGGAGATAGTTCTCTTTTCTGTATTTACTTGCATTCTGGCATTAGGAGGGTCAGTAATAGGAACAATTGCCGGAGCCATCAAAGGCCAGACCACCGAAGCTGGTTTTCTTGATGGAGCTGTCAAAGGAGCAATTATAGGAGCCATTGCAGGCATAGAATTGGTGAGTTTTTCTGCTGTTGATGAGCCATTGTCCAAGGTTGCCCTGTTGAGCAGTTTATTCAATGGACAAGTCTTAATGGAATGGATATGTCCAGCTGTTGCACAAGCCTATGAGTTGCATATCAACACGCCAGAAACTATTTACAGAGAAGTATCAGATATTTTTGATATCAAGGGAGTCGCAGGGATGCCCCAGAATATCATTCTTAAGCTTCCTTTTCAGCAATTCAACTCCAGCAAAATGTTGAAATTATACAATAAGTCGTGCTGCTCAATTTGCTTCCAGGATTTTGAGGATGGAGAGTTGGTCAGGATACTTCCAAAATGTGGCCACGTTTTTCATTTAGAATGTATAGACAAGTGGTTAATCCAACAAGGATCATGCCCAATGTGTAGAACTTATGTTCCAGACCACATTCGTGAATAG 870 0.3977 MNPVTNKLTPAAKLKNKNKKKMVPINGSLSASFLSNTFSAFLSSQFEIPITNTSPTMSKWFSGKIEAVTRCKEVFSLWVLASIGGYVVELFMKAMEIVLFSVFTCILALGGSVIGTIAGAIKGQTTEAGFLDGAVKGAIIGAIAGIELVSFSAVDEPLSKVALLSSLFNGQVLMEWICPAVAQAYELHINTPETIYREVSDIFDIKGVAGMPQNIILKLPFQQFNSSKMLKLYNKSCCSICFQDFEDGELVRILPKCGHVFHLECIDKWLIQQGSCPMCRTYVPDHIRE 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4144g00073 289 CDD RING-H2_EL5-like 237 280 - -
Gabi4144g00073 289 SMART ring_2 238 279 IPR001841 -
Gabi4144g00073 289 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 91 281 IPR044523 -
Gabi4144g00073 289 SUPERFAMILY RING/U-box 231 285 - -
Gabi4144g00073 289 Pfam Ring finger domain 238 280 IPR001841 -
Gabi4144g00073 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 286 IPR013083 -
Gabi4144g00073 289 ProSiteProfiles Zinc finger RING-type profile. 238 280 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4144g00073 Gabi-Chr4144 554187 557906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4144g00073 99 283 C3H Transcription Factor Family AT5G66070 39.394 1.03e-37 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4144g00073 - K19041 gmx:100305612 333.954