Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4144g00072 ATGGGTTGTTGTCTGAGTAAAAAAGGATCAGAACCAGAAGACCTTGTTTACAGACATGTTGGGGCTGGTGGTATGCGTAATCATAAGACTCATGAACCTTTTGTCAACCAATCAAAAGCCCCTGATGCAGCAGCACCACCTCAGGCACCATGGAAGCCCACTGTTTTTGCCATGAGCCCAAAACATGTTCAATGGTCAGATACAATTCTTGGGAAACCATTTGAGGATGTTAGGCAGTTCTATACATTGGGGAAAGAATTGGGGAGAGGCCAATTTGGGGTGACTTATTTGTGCACTGAGAATTCAACTGGCTTGCGATATGCTTGCAAGTCCATTTCAAAGAGGAAGCTTGTTAGCAAATCTGATAAGGAGGATATAAAGAGGGAGATTCAAATTATGCAGCATTTGAGTGGACAACCCAACATTGTTGAGTTCAAAGGTGCTTATGAGGATAAGCATTCGGTTCATGTTGTTATGGAGCTATGTGCAGGTGGTGAACTTTTTGATAGGATTATTGCCAAGGGGCACTACAGTGAAAGAGCTGCAGCTTCAATATGTAGACAAATTGTTAATGTTGTTCATATCTGCCATTTTATGGGTGTGATGCATAGGGATCTGAAGCCTGAGAATTTCTTATTGTCCAGTAAGGATGAAAATGCAATTCTCAAGGCCACAGATTTTGGCTTGTCGGTATTCATTGAGGAAGGTAAATTTCTTATTCATTCATGGTCTTTTGTTTTAATATTTAAATTTTTTAATATTTGTGAATTTATTTTTCCAGGAAAGGTGTATCGTGATATAGTTGGCAGTGCCTATTATGTTGCTCCAGAAGTTCTACGTCGTAGATATGGGAAGGAAATAGATATATGGAGTGCAGGAGTTATATTTTATATCTTACTTAGTGGCGTACCTCCATTTTGGGCAGAGACGGAAAAGGGAATATTTGATGCCATACAGAAAGGTCATATTGATTTTGAAAGTCATCCATGGCCAAGCATATCAAATAGTGCTAAGGACCTTGTTCGTAAGATGCTTATACAGGATCCAAAGAAACGCATTACTTCTGCTCAGGTTCTTGAGCACCCATGGATTAAAGAAGATGGAAATGCTTCCGACAAGCCAATAGACAGTGCAGTCCTTTCCAGAATGAAGCAATTCAGAGCAATGAATAAACTAAAGAAACTTGCCCTCAAGGTCATTGCTGAAAATCTCTCTGAAGAAGAGATCCAAGGTTTGAAGGCAATGTTTACAAATATTGACACTGACAATAGTGGTACAATCACCTATGAGGAACTGAGGGCAGGATTGCAAAGACTTGGCTCAAAGCTTACTGAAGCTGAAGTGCAGCAGCTTCTGGAAGCTGCTGATGTTGATGGAGATGGCACAATTGACTACATAGAATTCATCACTGCTACAATGCATAGACACAGATTAGAAAGAGATGAGCATCTTTACAAGGCCTTCCAATATTTTGATAAAGACAACAGTGGGTTTATTACAAGAGATGAACTGGAAACAGCCATGAAGGAATATGGTATGGGTGACGAAGATACAATCAAGGAAATTATATCTGAAGTTGATACAGATAATGATGGTAGAATAAACTATGAAGAATTTTGTGCAATGATGAGGAGTGGAACCCAACAACAAGGCAAGCTATTCTAA 1665 0.3958 MGCCLSKKGSEPEDLVYRHVGAGGMRNHKTHEPFVNQSKAPDAAAPPQAPWKPTVFAMSPKHVQWSDTILGKPFEDVRQFYTLGKELGRGQFGVTYLCTENSTGLRYACKSISKRKLVSKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDKHSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDENAILKATDFGLSVFIEEGKFLIHSWSFVLIFKFFNICEFIFPGKVYRDIVGSAYYVAPEVLRRRYGKEIDIWSAGVIFYILLSGVPPFWAETEKGIFDAIQKGHIDFESHPWPSISNSAKDLVRKMLIQDPKKRITSAQVLEHPWIKEDGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIQGLKAMFTNIDTDNSGTITYEELRAGLQRLGSKLTEAEVQQLLEAADVDGDGTIDYIEFITATMHRHRLERDEHLYKAFQYFDKDNSGFITRDELETAMKEYGMGDEDTIKEIISEVDTDNDGRINYEEFCAMMRSGTQQQGKLF 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4144g00072 554 ProSitePatterns EF-hand calcium-binding domain. 492 504 IPR018247 -
Gabi4144g00072 554 ProSiteProfiles EF-hand calcium-binding domain profile. 443 478 IPR002048 GO:0005509
Gabi4144g00072 554 Coils Coil 429 449 - -
Gabi4144g00072 554 SUPERFAMILY EF-hand 403 543 IPR011992 -
Gabi4144g00072 554 SUPERFAMILY Protein kinase-like (PK-like) 80 371 IPR011009 -
Gabi4144g00072 554 FunFam Calcium-dependent protein kinase 1 83 166 - -
Gabi4144g00072 554 Gene3D - 373 549 - -
Gabi4144g00072 554 SMART efh_1 518 546 IPR002048 GO:0005509
Gabi4144g00072 554 SMART efh_1 483 511 IPR002048 GO:0005509
Gabi4144g00072 554 SMART efh_1 447 475 IPR002048 GO:0005509
Gabi4144g00072 554 SMART efh_1 411 439 IPR002048 GO:0005509
Gabi4144g00072 554 ProSiteProfiles EF-hand calcium-binding domain profile. 515 549 IPR002048 GO:0005509
Gabi4144g00072 554 ProSitePatterns EF-hand calcium-binding domain. 456 468 IPR018247 -
Gabi4144g00072 554 Pfam Protein kinase domain 81 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4144g00072 554 Gene3D Phosphorylase Kinase; domain 1 83 166 - -
Gabi4144g00072 554 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Gabi4144g00072 554 Gene3D Transferase(Phosphotransferase) domain 1 167 372 - -
Gabi4144g00072 554 SMART serkin_6 81 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4144g00072 554 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524
Gabi4144g00072 554 ProSitePatterns EF-hand calcium-binding domain. 420 432 IPR018247 -
Gabi4144g00072 554 CDD STKc_CAMK 80 363 - -
Gabi4144g00072 554 PANTHER SERINE/THREONINE-PROTEIN KINASE 76 539 - -
Gabi4144g00072 554 FunFam Calcium-dependent protein kinase 1 372 547 - -
Gabi4144g00072 554 FunFam Calcium-dependent protein kinase SK5 167 376 - -
Gabi4144g00072 554 ProSiteProfiles EF-hand calcium-binding domain profile. 479 514 IPR002048 GO:0005509
Gabi4144g00072 554 CDD EFh 486 544 IPR002048 GO:0005509
Gabi4144g00072 554 ProSiteProfiles EF-hand calcium-binding domain profile. 407 442 IPR002048 GO:0005509
Gabi4144g00072 554 ProSitePatterns EF-hand calcium-binding domain. 527 539 IPR018247 -
Gabi4144g00072 554 ProSiteProfiles Protein kinase domain profile. 81 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4144g00072 554 Pfam EF-hand domain pair 482 544 IPR002048 GO:0005509
Gabi4144g00072 554 Pfam EF-hand domain pair 412 472 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4144g00072 Gabi-Chr4144 543837 548475 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4144g00072 57 554 EF-hand Containing Proteins AT3G20410 78.000 0.0 817
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi4144g00072 Pkinase 5.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4144g00072 K13412 - gmx:100794852 906.746