Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4144g00071 ATGGGTTGTTGTCTGAGTAAAAAAGGATCAGAACCAGAAGACCTTGTTTACAGACATGTTGGGGCTGGTGGTATGCGTAATCATAAGACTCATGAACCTTTTGTCAACCAATCAAAAGCCCCTGATGCAGCAGCACCACCTCAGGCACCATGGAAGCCCACTGTTTTTGCCATGAGCCCAAAACATGTTCAATGGTCAGATACAATTCTTGGGAAACCATTTGAGGATGTTAGGCAGTTCTATACATTGGGGAAAGAATTGGGGAGAGGCCAATTTGGGGTGACTTATTTGTGCACTGAGAATTCAACTGGCTTGCGATATGCTTGCAAGTCCATTTCAAAGAGGAAGCTTGTTAGCAAATCTGATAAGGAGGATATAAAGAGGGAGATTCAAATTATGCAGCATTTGAGTGGACAACCCAACATTGTTGAGTTCAAAGGTGCTTATGAGGATAAGCATTCGGTTCATGTTGTTATGGAGCTATGTGCAGGTGGTGAACTTTTTGATAGGATTATTGCCAAGGGGCACTACAGTGAAAGAGCTGCAGCTTCAATATGTAGACAAATTGTTAATGTTGTTCATATCTGCCATTTTATGGGTGTGATGCATAGGGATCTGAAGCCTGAGAATTTCTTATTGTCCAGTAAGGATGAAAATGCAATTCTCAAGGCCACAGATTTTGGCTTGTCGGTATTCATTGAGGAAGGAAAGGTGTATCGTGATATAGTTGGCAGTGCCTATTATGTTGCTCCAGAAGTTCTACGTCGTAGATATGGGAAGGAAATAGATATATGGAGTGCAGGAGTTATATTTTATATCTTACTTAGTGGCGTACCTCCATTTTGGGCAGGTAAACTGTCACTTATAGAGACGGAAAAGGGAATATTTGATGCCATACAGAAAGGTCATATTGATTTTGAAAGTCATCCATGGCCAAGCATATCAAATAGTGCTAAGGACCTTGTTCGTAAGATGCTTATACAGGATCCAAAGAAACGCATTACTTCTGCTCAGGTTCTTGAGCACCCATGGATTAAAGAAGATGGAAATGCTTCCGACAAGCCAATAGACAGTGCAGTCCTTTCCAGAATGAAGCAATTCAGAGCAATGAATAAACTAAAGAAACTTGCCCTCAAGGTCATTGCTGAAAATCTCTCTGAAGAAGAGATCCAAGGTTTGAAGGCAATGTTTACAAATATTGACACTGACAATAGTGGTACAATCACCTATGAGGAACTGAGGGCAGGATTGCAAAGACTTGGCTCAAAGCTTACTGAAGCTGAAGTGCAGCAGCTTCTGGAAGCTGTAAGCGCTGATGTTGATGGAGATGGCACAATTGACTACATAGAATTCATCACTGCTACAATGCATAGACACAGATTAGAAAGAGATGAGCATCTTTACAAGGCCTTCCAATATTTTGATAAAGACAACAGTGGGTTTATTACAAGAGATGAACTGGAAACAGCCATGAAGGAATATGGTATGGGTGACGAAGATACAATCAAGGAAATTATATCTGAAGTTGATACAGATAATGATGGTAGAATAAACTATGAAGAATTTTGTGCAATGATGAGGAGTGGAACCCAACAACAAGGCAAGCTATTCTAA 1614 0.4058 MGCCLSKKGSEPEDLVYRHVGAGGMRNHKTHEPFVNQSKAPDAAAPPQAPWKPTVFAMSPKHVQWSDTILGKPFEDVRQFYTLGKELGRGQFGVTYLCTENSTGLRYACKSISKRKLVSKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDKHSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDENAILKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRYGKEIDIWSAGVIFYILLSGVPPFWAGKLSLIETEKGIFDAIQKGHIDFESHPWPSISNSAKDLVRKMLIQDPKKRITSAQVLEHPWIKEDGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIQGLKAMFTNIDTDNSGTITYEELRAGLQRLGSKLTEAEVQQLLEAVSADVDGDGTIDYIEFITATMHRHRLERDEHLYKAFQYFDKDNSGFITRDELETAMKEYGMGDEDTIKEIISEVDTDNDGRINYEEFCAMMRSGTQQQGKLF 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4144g00071 537 Pfam Protein kinase domain 81 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4144g00071 537 ProSitePatterns EF-hand calcium-binding domain. 401 413 IPR018247 -
Gabi4144g00071 537 Coils Coil 410 430 - -
Gabi4144g00071 537 CDD EFh 469 527 IPR002048 GO:0005509
Gabi4144g00071 537 ProSiteProfiles Protein kinase domain profile. 81 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4144g00071 537 ProSitePatterns EF-hand calcium-binding domain. 475 487 IPR018247 -
Gabi4144g00071 537 FunFam Calcium-dependent protein kinase 1 353 530 - -
Gabi4144g00071 537 Pfam EF-hand domain pair 393 455 IPR002048 GO:0005509
Gabi4144g00071 537 Pfam EF-hand domain pair 465 527 IPR002048 GO:0005509
Gabi4144g00071 537 SUPERFAMILY Protein kinase-like (PK-like) 80 352 IPR011009 -
Gabi4144g00071 537 FunFam Calcium-dependent protein kinase 1 83 166 - -
Gabi4144g00071 537 ProSiteProfiles EF-hand calcium-binding domain profile. 388 423 IPR002048 GO:0005509
Gabi4144g00071 537 FunFam calcium-dependent protein kinase 1 167 352 - -
Gabi4144g00071 537 CDD STKc_CAMK 80 344 - -
Gabi4144g00071 537 PANTHER SERINE/THREONINE-PROTEIN KINASE 76 522 - -
Gabi4144g00071 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Gabi4144g00071 537 ProSiteProfiles EF-hand calcium-binding domain profile. 462 497 IPR002048 GO:0005509
Gabi4144g00071 537 ProSitePatterns EF-hand calcium-binding domain. 510 522 IPR018247 -
Gabi4144g00071 537 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524
Gabi4144g00071 537 SUPERFAMILY EF-hand 384 526 IPR011992 -
Gabi4144g00071 537 ProSiteProfiles EF-hand calcium-binding domain profile. 498 532 IPR002048 GO:0005509
Gabi4144g00071 537 SMART serkin_6 81 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4144g00071 537 SMART efh_1 392 420 IPR002048 GO:0005509
Gabi4144g00071 537 SMART efh_1 501 529 IPR002048 GO:0005509
Gabi4144g00071 537 SMART efh_1 428 458 IPR002048 GO:0005509
Gabi4144g00071 537 SMART efh_1 466 494 IPR002048 GO:0005509
Gabi4144g00071 537 Gene3D - 357 532 - -
Gabi4144g00071 537 Gene3D Phosphorylase Kinase; domain 1 83 166 - -
Gabi4144g00071 537 ProSitePatterns EF-hand calcium-binding domain. 439 451 IPR018247 -
Gabi4144g00071 537 Gene3D Transferase(Phosphotransferase) domain 1 167 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4144g00071 Gabi-Chr4144 543837 548475 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4144g00071 57 537 EF-hand Containing Proteins AT3G20410 80.745 0.0 821
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi4144g00071 Pkinase 8.9e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4144g00071 K13412 - gmx:100794852 909.057