Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4144g00070 ATGGGTTGTTGTCTGAGTAAAAAAGGATCAGAACCAGAAGACCTTGTTTACAGACATGTTGGGGCTGGTGGTATGCGTAATCATAAGACTCATGAACCTTTTGTCAACCAATCAAAAGCCCCTGATGCAGCAGCACCACCTCAGGCACCATGGAAGCCCACTGTTTTTGCCATGAGCCCAAAACATGTTCAATGGTCAGATACAATTCTTGGGAAACCATTTGAGGATGTTAGGCAGTTCTATACATTGGGGAAAGAATTGGGGAGAGGCCAATTTGGGGTGACTTATTTGTGCACTGAGAATTCAACTGGCTTGCGATATGCTTGCAAGTCCATTTCAAAGAGGAAGCTTGTTAGCAAATCTGATAAGGAGGATATAAAGAGGGAGATTCAAATTATGCAGCATTTGAGTGGACAACCCAACATTGTTGAGTTCAAAGGTGCTTATGAGGATAAGCATTCGGTTCATGTTGTTATGGAGCTATGTGCAGGTGGTGAACTTTTTGATAGGATTATTGCCAAGGGGCACTACAGTGAAAGAGCTGCAGCTTCAATATGTAGACAAATTGTTAATGTTGTTCATATCTGCCATTTTATGGGTGTGATGCATAGGGATCTGAAGCCTGAGAATTTCTTATTGTCCAGTAAGGATGAAAATGCAATTCTCAAGGCCACAGATTTTGGCTTGTCGGTATTCATTGAGGAAGGAAAGGTGTATCGTGATATAGTTGGCAGTGCCTATTATGTTGCTCCAGAAGTTCTACGTCGTAGATATGGGAAGGAAATAGATATATGGAGTGCAGGAGTTATATTTTATATCTTACTTAGTGGCGTACCTCCATTTTGGGCAGGTAAACTGTCACTTATAGAGACGGAAAAGGGAATATTTGATGCCATACAGAAAGGTCATATTGATTTTGAAAGTCATCCATGGCCAAGCATATCAAATAGTGCTAAGGACCTTGTTCGTAAGATGCTTATACAGGATCCAAAGAAACGCATTACTTCTGCTCAGGTTCTTGAGCACCCATGGATTAAAGAAGATGGAAATGCTTCCGACAAGCCAATAGACAGTGCAGTCCTTTCCAGAATGAAGCAATTCAGAGCAATGAATAAACTAAAGAAACTTGCCCTCAAGGTCATTGCTGAAAATCTCTCTGAAGAAGAGATCCAAGGTTTGAAGGCAATGTTTACAAATATTGACACTGACAATAGTGGTACAATCACCTATGAGGAACTGAGGGCAGGATTGCAAAGACTTGGCTCAAAGCTTACTGAAGCTGAAGTGCAGCAGCTTCTGGAAGCTGCTGATGTTGATGGAGATGGCACAATTGACTACATAGAATTCATCACTGCTACAATGCATAGACACAGATTAGAAAGAGATGAGCATCTTTACAAGGCCTTCCAATATTTTGATAAAGACAACAGTGGGTTTATTACAAGAGATGAACTGGAAACAGCCATGAAGGAATATGGTATGGGTGACGAAGATACAATCAAGGAAATTATATCTGAAGTTGATACAGATAATGATGGTAGAATAAACTATGAAGAATTTTGTGCAATGATGAGGAGTGGAACCCAACAACAAGGCAAGCTATTCTAA 1608 0.4055 MGCCLSKKGSEPEDLVYRHVGAGGMRNHKTHEPFVNQSKAPDAAAPPQAPWKPTVFAMSPKHVQWSDTILGKPFEDVRQFYTLGKELGRGQFGVTYLCTENSTGLRYACKSISKRKLVSKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDKHSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDENAILKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRYGKEIDIWSAGVIFYILLSGVPPFWAGKLSLIETEKGIFDAIQKGHIDFESHPWPSISNSAKDLVRKMLIQDPKKRITSAQVLEHPWIKEDGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIQGLKAMFTNIDTDNSGTITYEELRAGLQRLGSKLTEAEVQQLLEAADVDGDGTIDYIEFITATMHRHRLERDEHLYKAFQYFDKDNSGFITRDELETAMKEYGMGDEDTIKEIISEVDTDNDGRINYEEFCAMMRSGTQQQGKLF 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4144g00070 535 FunFam calcium-dependent protein kinase 1 167 352 - -
Gabi4144g00070 535 ProSitePatterns EF-hand calcium-binding domain. 401 413 IPR018247 -
Gabi4144g00070 535 Gene3D Transferase(Phosphotransferase) domain 1 167 356 - -
Gabi4144g00070 535 Coils Coil 410 430 - -
Gabi4144g00070 535 ProSiteProfiles EF-hand calcium-binding domain profile. 496 530 IPR002048 GO:0005509
Gabi4144g00070 535 ProSiteProfiles Protein kinase domain profile. 81 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4144g00070 535 SUPERFAMILY EF-hand 384 524 IPR011992 -
Gabi4144g00070 535 ProSitePatterns EF-hand calcium-binding domain. 437 449 IPR018247 -
Gabi4144g00070 535 FunFam Calcium-dependent protein kinase 1 83 166 - -
Gabi4144g00070 535 ProSiteProfiles EF-hand calcium-binding domain profile. 388 423 IPR002048 GO:0005509
Gabi4144g00070 535 CDD STKc_CAMK 80 344 - -
Gabi4144g00070 535 SMART efh_1 392 420 IPR002048 GO:0005509
Gabi4144g00070 535 SMART efh_1 499 527 IPR002048 GO:0005509
Gabi4144g00070 535 SMART efh_1 428 456 IPR002048 GO:0005509
Gabi4144g00070 535 SMART efh_1 464 492 IPR002048 GO:0005509
Gabi4144g00070 535 FunFam Calcium-dependent protein kinase 1 353 528 - -
Gabi4144g00070 535 Pfam EF-hand domain pair 393 453 IPR002048 GO:0005509
Gabi4144g00070 535 Pfam EF-hand domain pair 463 525 IPR002048 GO:0005509
Gabi4144g00070 535 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Gabi4144g00070 535 Pfam Protein kinase domain 81 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4144g00070 535 Gene3D Phosphorylase Kinase; domain 1 83 166 - -
Gabi4144g00070 535 ProSitePatterns EF-hand calcium-binding domain. 473 485 IPR018247 -
Gabi4144g00070 535 ProSiteProfiles EF-hand calcium-binding domain profile. 424 459 IPR002048 GO:0005509
Gabi4144g00070 535 ProSitePatterns EF-hand calcium-binding domain. 508 520 IPR018247 -
Gabi4144g00070 535 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524
Gabi4144g00070 535 PANTHER SERINE/THREONINE-PROTEIN KINASE 76 520 - -
Gabi4144g00070 535 ProSiteProfiles EF-hand calcium-binding domain profile. 460 495 IPR002048 GO:0005509
Gabi4144g00070 535 SMART serkin_6 81 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4144g00070 535 SUPERFAMILY Protein kinase-like (PK-like) 80 352 IPR011009 -
Gabi4144g00070 535 CDD EFh 467 525 IPR002048 GO:0005509
Gabi4144g00070 535 Gene3D - 357 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4144g00070 Gabi-Chr4144 543837 548475 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4144g00070 57 535 EF-hand Containing Proteins AT3G20410 81.081 0.0 826
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi4144g00070 Pkinase 8.8e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4144g00070 K13412 - gmx:100794852 914.064