Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4144g00069 ATGGGTTGTTGTCTGAGTAAAAAAGGATCAGAACCAGAAGACCTTGTTTACAGACATGTTGGGGCTGGTGGTATGCGTAATCATAAGACTCATGAACCTTTTGTCAACCAATCAAAAGCCCCTGATGCAGCAGCACCACCTCAGGCACCATGGAAGCCCACTGTTTTTGCCATGAGCCCAAAACATGTTCAATGGTCAGATACAATTCTTGGGAAACCATTTGAGGATGTTAGGCAGTTCTATACATTGGGGAAAGAATTGGGGAGAGGCCAATTTGGGGTGACTTATTTGTGCACTGAGAATTCAACTGGCTTGCGATATGCTTGCAAGTCCATTTCAAAGAGGAAGCTTGTTAGCAAATCTGATAAGGAGGATATAAAGAGGGAGATTCAAATTATGCAGCATTTGAGTGGACAACCCAACATTGTTGAGTTCAAAGGTGCTTATGAGGATAAGCATTCGGTTCATGTTGTTATGGAGCTATGTGCAGGTGGTGAACTTTTTGATAGGATTATTGCCAAGGGGCACTACAGTGAAAGAGCTGCAGCTTCAATATGTAGACAAATTGTTAATGTTGTTCATATCTGCCATTTTATGGGTGTGATGCATAGGGATCTGAAGCCTGAGAATTTCTTATTGTCCAGTAAGGATGAAAATGCAATTCTCAAGGCCACAGATTTTGGCTTGTCGGTATTCATTGAGGAAGGAAAGGTGTATCGTGATATAGTTGGCAGTGCCTATTATGTTGCTCCAGAAGTTCTACGTCGTAGATATGGGAAGGAAATAGATATATGGAGTGCAGGAGTTATATTTTATATCTTACTTAGTGGCGTACCTCCATTTTGGGCAGAGACGGAAAAGGGAATATTTGATGCCATACAGAAAGGTCATATTGATTTTGAAAGTCATCCATGGCCAAGCATATCAAATAGTGCTAAGGACCTTGTTCGTAAGATGCTTATACAGGATCCAAAGAAACGCATTACTTCTGCTCAGGTTCTTGAGCACCCATGGATTAAAGAAGATGGAAATGCTTCCGACAAGCCAATAGACAGTGCAGTCCTTTCCAGAATGAAGCAATTCAGAGCAATGAATAAACTAAAGAAACTTGCCCTCAAGGTCATTGCTGAAAATCTCTCTGAAGAAGAGATCCAAGGTTTGAAGGCAATGTTTACAAATATTGACACTGACAATAGTGGTACAATCACCTATGAGGAACTGAGGGCAGGATTGCAAAGACTTGGCTCAAAGCTTACTGAAGCTGAAGTGCAGCAGCTTCTGGAAGCTGCTGATGTTGATGGAGATGGCACAATTGACTACATAGAATTCATCACTGCTACAATGCATAGACACAGATTAGAAAGAGATGAGCATCTTTACAAGGCCTTCCAATATTTTGATAAAGACAACAGTGGGTTTATTACAAGAGATGAACTGGAAACAGCCATGAAGGAATATGGTATGGGTGACGAAGATACAATCAAGGAAATTATATCTGAAGTTGATACAGATAATGATGGTAGAATAAACTATGAAGAATTTTGTGCAATGATGAGGAGTGGAACCCAACAACAAGGCAAGCTATTCTAA 1590 0.4063 MGCCLSKKGSEPEDLVYRHVGAGGMRNHKTHEPFVNQSKAPDAAAPPQAPWKPTVFAMSPKHVQWSDTILGKPFEDVRQFYTLGKELGRGQFGVTYLCTENSTGLRYACKSISKRKLVSKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDKHSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDENAILKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRYGKEIDIWSAGVIFYILLSGVPPFWAETEKGIFDAIQKGHIDFESHPWPSISNSAKDLVRKMLIQDPKKRITSAQVLEHPWIKEDGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIQGLKAMFTNIDTDNSGTITYEELRAGLQRLGSKLTEAEVQQLLEAADVDGDGTIDYIEFITATMHRHRLERDEHLYKAFQYFDKDNSGFITRDELETAMKEYGMGDEDTIKEIISEVDTDNDGRINYEEFCAMMRSGTQQQGKLF 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4144g00069 529 Pfam Protein kinase domain 81 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4144g00069 529 Gene3D - 348 524 - -
Gabi4144g00069 529 FunFam Calcium-dependent protein kinase 1 83 166 - -
Gabi4144g00069 529 Gene3D Transferase(Phosphotransferase) domain 1 167 347 - -
Gabi4144g00069 529 ProSitePatterns EF-hand calcium-binding domain. 467 479 IPR018247 -
Gabi4144g00069 529 Gene3D Phosphorylase Kinase; domain 1 83 166 - -
Gabi4144g00069 529 FunFam calcium-dependent protein kinase 1 167 346 - -
Gabi4144g00069 529 ProSiteProfiles EF-hand calcium-binding domain profile. 454 489 IPR002048 GO:0005509
Gabi4144g00069 529 FunFam Calcium-dependent protein kinase 1 347 522 - -
Gabi4144g00069 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Gabi4144g00069 529 SMART serkin_6 81 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4144g00069 529 ProSitePatterns EF-hand calcium-binding domain. 502 514 IPR018247 -
Gabi4144g00069 529 PANTHER SERINE/THREONINE-PROTEIN KINASE 76 514 - -
Gabi4144g00069 529 CDD EFh 461 519 IPR002048 GO:0005509
Gabi4144g00069 529 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524
Gabi4144g00069 529 ProSitePatterns EF-hand calcium-binding domain. 431 443 IPR018247 -
Gabi4144g00069 529 ProSiteProfiles EF-hand calcium-binding domain profile. 382 417 IPR002048 GO:0005509
Gabi4144g00069 529 ProSiteProfiles Protein kinase domain profile. 81 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4144g00069 529 CDD STKc_CAMK 80 338 - -
Gabi4144g00069 529 ProSiteProfiles EF-hand calcium-binding domain profile. 490 524 IPR002048 GO:0005509
Gabi4144g00069 529 Pfam EF-hand domain pair 457 519 IPR002048 GO:0005509
Gabi4144g00069 529 Pfam EF-hand domain pair 387 447 IPR002048 GO:0005509
Gabi4144g00069 529 SUPERFAMILY Protein kinase-like (PK-like) 80 346 IPR011009 -
Gabi4144g00069 529 SUPERFAMILY EF-hand 378 518 IPR011992 -
Gabi4144g00069 529 ProSitePatterns EF-hand calcium-binding domain. 395 407 IPR018247 -
Gabi4144g00069 529 ProSiteProfiles EF-hand calcium-binding domain profile. 418 453 IPR002048 GO:0005509
Gabi4144g00069 529 SMART efh_1 422 450 IPR002048 GO:0005509
Gabi4144g00069 529 SMART efh_1 458 486 IPR002048 GO:0005509
Gabi4144g00069 529 SMART efh_1 386 414 IPR002048 GO:0005509
Gabi4144g00069 529 SMART efh_1 493 521 IPR002048 GO:0005509
Gabi4144g00069 529 Coils Coil 404 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4144g00069 Gabi-Chr4144 543837 548475 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4144g00069 57 529 EF-hand Containing Proteins AT3G20410 82.105 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi4144g00069 Pkinase 4.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4144g00069 K13412 - gmx:100794852 920.613