Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4144g00066 ATGATGCTGGCGAGCGATCTCATCTTTCAAAGGAAGTCCTTGCTACTTGTGAAAGTATTGAATGGCAGAAAGGTGGATGAATTGGACAAAGCAATTGCTGTAGCATCTAGAGATCCTTCTTGGTATGGCATTGATGCAGTGGAGATTGAAAACAGGAGGAGTTGGACCAGCAGTGCTCGCACCCAGGTGCGCTCAGTTAAGAAAGCAGTGGAAGCTGGAAAGGGCTCAAATACAGCAAACCATGCTAGTGTAAATGGGATGCACAGAGAATTAATGAGGCTTCCTGATTCTCATCAAACTAACACATCCAACCATTATGGTGCCCACGATAATGATGATTTCATAGAATCAGAATCAGATAGACAGATGCTTCTTATAAAGAAACAGGATGAGGAGTTGGATGAGCTTAGTTTAAGCGTGCAGAGAATTGGAGGTGTTGGACTTACGATACATGAAGAGCTAAATGCGCAGGAAAGGATTATAGATGATCTGGGTGCTGAGATGGACAGTACATCTAATCGTCTAGATTTTGTCCAAAAAAAAGTAGCAATGGTCATGAAGAAGGCTAGCGCAAAGGGCCAGATCATGATGATATTGGGTTTGCTGGCCTTGTTCATTTTCCTCTTTATCTTGGTGTTCTTCACCTAG 648 0.429 MMLASDLIFQRKSLLLVKVLNGRKVDELDKAIAVASRDPSWYGIDAVEIENRRSWTSSARTQVRSVKKAVEAGKGSNTANHASVNGMHRELMRLPDSHQTNTSNHYGAHDNDDFIESESDRQMLLIKKQDEELDELSLSVQRIGGVGLTIHEELNAQERIIDDLGAEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILGLLALFIFLFILVFFT 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4144g00066 215 FunFam syntaxin-61 isoform X1 126 187 - -
Gabi4144g00066 215 Pfam SNARE domain 160 211 IPR000727 -
Gabi4144g00066 215 SUPERFAMILY SNARE fusion complex 121 185 - -
Gabi4144g00066 215 Coils Coil 154 181 - -
Gabi4144g00066 215 Gene3D - 130 194 - -
Gabi4144g00066 215 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 123 185 IPR000727 -
Gabi4144g00066 215 PANTHER GOLGI SNARE BET1-RELATED 98 212 - -
Gabi4144g00066 215 CDD SNARE_Qc 126 183 - -
Gabi4144g00066 215 Gene3D - 21 73 - -
Gabi4144g00066 215 SUPERFAMILY t-snare proteins 24 70 IPR010989 GO:0016020|GO:0016192
Gabi4144g00066 215 Pfam Syntaxin 6, N-terminal 24 67 IPR015260 GO:0016020|GO:0048193
Gabi4144g00066 215 SMART tSNARE_6 118 185 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4144g00066 Gabi-Chr4144 519809 523839 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4144g00066 19 215 SNARE and Associated Proteins AT1G28490 69.543 3.86e-96 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4144g00066 K08500 - gmx:100793612 272.322