Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4144g00060 ATGGCAGTTGTACGAAACGGTTCAAAGCAATTGCAGGAGGAAGGGGATTCTTCTTCAAAAAACAAGCAGGTGGTGGTGGAAGGTGCAGCTCCCCATCAAGAAAATCAAAACCTGCAAATGCCCAATGTGCTAAGAATCGTGCGCCAAGCTCTTCCACCGAATGCAGAAATCAGTGATGAAACAAAGATAACAATGGTACAGTGTGCGACTAATTTCATTAGCCTCATCACTAGCGAGGCTAAAAGACGGTGCGAAAGCGAGCAACGATCATCTGTTACCGAAGAAGATTTGTTATGGGCAATGAGGAGGTTAGGTTTACATAATTATGCTGCCTTTTGCACTCTTTACTCTGCATATCGTGGCGGACCTGTTCCAGCTGCACAACCAGCTGTGATTGCAAATGATAGTGTGCCACCACCATTATCAACAGCTTCTGATGCCCCAACGGAAAAAGATGAGTCAGGAGCTGGTACCAGCTCAAGTGGTGCCAAAGTTTACCGCTTACCTTAA 510 0.4588 MAVVRNGSKQLQEEGDSSSKNKQVVVEGAAPHQENQNLQMPNVLRIVRQALPPNAEISDETKITMVQCATNFISLITSEAKRRCESEQRSSVTEEDLLWAMRRLGLHNYAAFCTLYSAYRGGPVPAAQPAVIANDSVPPPLSTASDAPTEKDESGAGTSSSGAKVYRLP 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4144g00060 169 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 116 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gabi4144g00060 169 MobiDBLite consensus disorder prediction 132 169 - -
Gabi4144g00060 169 MobiDBLite consensus disorder prediction 1 23 - -
Gabi4144g00060 169 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 37 101 IPR003958 -
Gabi4144g00060 169 Gene3D Histone, subunit A 25 120 IPR009072 GO:0046982
Gabi4144g00060 169 MobiDBLite consensus disorder prediction 138 161 - -
Gabi4144g00060 169 SUPERFAMILY Histone-fold 38 116 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4144g00060 Gabi-Chr4144 478866 480014 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4144g00060 17 116 CCAAT-HAP3 Transcription Factor Family AT1G21970 40.777 2.11e-25 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gabi4144g00060 CBFD_NFYB_HMF 1.2e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4144g00060 K08065 - ini:109174641 93.5893