Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4141g00082 ATGCAGTCAACAAAACAAGCCTGGAAAGATTTTTCCCTTGAGGTGGAAATAATATCCTCATTGAAGCACAAAAGTATCGCCCCTCTACTTGGGATTTGCATTGAGGACAATGCTTTAATCTCTGTTTATGATTATTTCCCCAAAGGCAGCTTAGAGGAAAATCTACATGGAAAGAACAAGGATGGATCTATCTTGACATGGGAAATGAGATTTAATGTAGCTGTTGGGATCGCAGAAGCCCTTGATTACCTACACAGGGAAGCTTTGAAGCCTGTTATACATAGAGATGTCAAGTCTTCAAACATTCTTCTTTCCCAAGGGTTTGAACCACAACTATCTGATTTCGGACTTGCAATATGGGGACCAACAACTTCATCCTTTTTGACTCAAGAAGATGTAGTAGGAACATTTGGTTATCTTGCTCCTGAATACTTCATGTATGGAAAGGTCAGTGACAAGATAGACGTCTATGCCTTTGGTGTAGTTCTACTTGAACTAATATCAGGAAGGGAACCAATCAGCTCCGAACCTTTCAAAGGACAGGAAAGCTTGGTCGTGTGGGCAAAACCAATAATAGAAAGTGGGGATATTAAAGGCTTATTAGACCCAAATTTAGAAGGGAAGTTTGATGAGGCCCAAATGCAAAGAATGGTTCTGGCAGCATCTTTATGCATCACACGGGCTGCTAGGCTTCGTCCTAAACTAAACCAGGTATTAAGGATCCTAAAAGGAGATGAGAAAGTTGAACATATCTTCAACTCCCACGGTAATGATCACGATGATTCAGAAAATCAAGAAAACATTGATGATGAAGTTTATCCATATTCAAGTGCAGAGTTACACCTGAGTCTTGCATTACTTGGTGTTGACGATGACCGTGCATCATGTTGTAGCACAGATCACAGCAATAGTGAACACCTGAAAGAACAATGGAGCAGGTCGTCAAGTTTTGATTAG 957 0.4054 MQSTKQAWKDFSLEVEIISSLKHKSIAPLLGICIEDNALISVYDYFPKGSLEENLHGKNKDGSILTWEMRFNVAVGIAEALDYLHREALKPVIHRDVKSSNILLSQGFEPQLSDFGLAIWGPTTSSFLTQEDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGREPISSEPFKGQESLVVWAKPIIESGDIKGLLDPNLEGKFDEAQMQRMVLAASLCITRAARLRPKLNQVLRILKGDEKVEHIFNSHGNDHDDSENQENIDDEVYPYSSAELHLSLALLGVDDDRASCCSTDHSNSEHLKEQWSRSSSFD 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4141g00082 318 ProSitePatterns Serine/Threonine protein kinases active-site signature. 92 104 IPR008271 GO:0004672|GO:0006468
Gabi4141g00082 318 Gene3D Transferase(Phosphotransferase) domain 1 50 259 - -
Gabi4141g00082 318 FunFam Putative receptor-like serine/threonine-protein kinase 46 258 - -
Gabi4141g00082 318 Pfam Protein kinase domain 5 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4141g00082 318 Gene3D Phosphorylase Kinase; domain 1 1 49 - -
Gabi4141g00082 318 ProSiteProfiles Protein kinase domain profile. 1 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4141g00082 318 SMART serkin_6 1 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4141g00082 318 PANTHER OS08G0249100 PROTEIN 3 269 IPR046958 -
Gabi4141g00082 318 SUPERFAMILY Protein kinase-like (PK-like) 9 244 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4141g00082 Gabi-Chr4141 598682 600688 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4141g00082 4 255 Trihelix Transcription Factor Family AT1G70460 42.578 3.41e-65 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gabi4141g00082 Pkinase 5.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4141g00082 - - gmx:100789189 546.969