Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4141g00081 ATGACAGTTGAGAGGAGGTTTGTTTTGGTGGGGATTAGAATCGATAACCATAGCAGACAGCTCCTTAACTGGGCTCTTGTCAAGGTTGCTGAACCTGGGGATTGTGTTATTGCAGTCCATGTAGTTAAAAGTTCAGATTATGTTTCTAAAAACAAGACCCTGATAGATGGCTACTTAGAGGTTTATGAAGGCCTGTGTAGTGTGCAGAAGGTAGGTCTCACTGGTCAAATCTTCACAGGAAACTCCATTCAAAACATTCTTGTCAGAGAAGCAAAAAAACATGCTGCTCTGGCTCTAGTGGTAGGGGGTCGATCTTCCACAGCTAAATATTGCGCCAAACGACTTCCACCTACCACCAATGTTCTAGCCATCCAAGATTCAAGAATTGTCTTCAGGAGGTGCACCAATAAACAACTACCAGGTGGTCTTATACTGGATCCAAGACCAAGTTTCTCAAGCATACAAAACCTGAGTGACAAAATAATCCAGTCTGAATTTGATGACTCCCTGGTGGAGAGTGAGAAATCAACACCCCAAGATACCAGAGAATTGAAGGAAGAAACATTTAACGGATCAGAAAGGTGCAAAACAAGGTCAATAACTATGTTTGCTGGTGATCCTGCTGAGCAGAAGCTTGGGTGGCCTCTACTCCGCAGAGCTAATTCAGGAATCTCACAAACCCGTCATGCAAGGGACATGTCTGTAGTACAATGGGTAATGAACTTACCAGATCGTTCACCACATAAAAGTCCTCACTCTTCTTCTTCCATTGAGGAAAATCCATTCAAAAGGGGCATCAGCGATATTGAGGATGAGAGCTCTAAAAATTCTTCACCTCCATCCGTTGAACTACCAAAGGGCCTAGAGGGGATGTTAAATGTAAATTCACTCAATTGCAGGTGGTTCAGCCTTGAGGTTCTGAAGTCTTGCACCAGCCAATTCTCTTCAGAAAAGTTGATTGGGAAAGGAGGGAGCAATCGTGTATACAAAGGAGTTCTCCATGATGGAAAACCAATCGCAGTTAAAGTTATGCAGTCAACAAAACAAGCCTGGAAAGATTTTTCCCTTGAGGTGGAAATAATATCCTCATTGAAGCACAAAAGTATCGCCCCTCTACTTGGGATTTGCATTGAGGACAATGCTTTAATCTCTGTTTATGATTATTTCCCCAAAGGCAGCTTAGAGGAAAATCTACATGGAAAGAACAAGGATGGATCTATCTTGACATGGGAAATGAGATTTAATGTAGCTGTTGGGATCGCAGAAGCCCTTGATTACCTACACAGGGAAGCTTTGAAGCCTGTTATACATAGAGATGTCAAGTCTTCAAACATTCTTCTTTCCCAAGGGTTTGAACCACAACTATCTGATTTCGGACTTGCAATATGGGGACCAACAACTTCATCCTTTTTGACTCAAGAAGATGTAGTAGGAACATTTGGTTATCTTGCTCCTGAATACTTCATGTATGGAAAGGTCAGTGACAAGATAGACGTCTATGCCTTTGGTGTAGTTCTACTTGAACTAATATCAGGAAGGGAACCAATCAGCTCCGAACCTTTCAAAGGACAGGAAAGCTTGGTCGTGTGGGCAAAACCAATAATAGAAAGTGGGGATATTAAAGGCTTATTAGACCCAAATTTAGAAGGGAAGTTTGATGAGGCCCAAATGCAAAGAATGGTTCTGGCAGCATCTTTATGCATCACACGGGCTGCTAGGCTTCGTCCTAAACTAAACCAGGTATTAAGGATCCTAAAAGGAGATGAGAAAGTTGAACATATCTTCAACTCCCACGGTAATGATCACGATGATTCAGAAAATCAAGAAAACATTGATGATGAAGTTTATCCATATTCAAGTGCAGAGTTACACCTGAGTCTTGCATTACTTGGTGTTGACGATGACCGTGCATCATGTTGTAGCACAGATCACAGCAATAGTGAACACCTGAAAGAACAATGGAGCAGGTCGTCAAGTTTTGATTAG 1986 0.4194 MTVERRFVLVGIRIDNHSRQLLNWALVKVAEPGDCVIAVHVVKSSDYVSKNKTLIDGYLEVYEGLCSVQKVGLTGQIFTGNSIQNILVREAKKHAALALVVGGRSSTAKYCAKRLPPTTNVLAIQDSRIVFRRCTNKQLPGGLILDPRPSFSSIQNLSDKIIQSEFDDSLVESEKSTPQDTRELKEETFNGSERCKTRSITMFAGDPAEQKLGWPLLRRANSGISQTRHARDMSVVQWVMNLPDRSPHKSPHSSSSIEENPFKRGISDIEDESSKNSSPPSVELPKGLEGMLNVNSLNCRWFSLEVLKSCTSQFSSEKLIGKGGSNRVYKGVLHDGKPIAVKVMQSTKQAWKDFSLEVEIISSLKHKSIAPLLGICIEDNALISVYDYFPKGSLEENLHGKNKDGSILTWEMRFNVAVGIAEALDYLHREALKPVIHRDVKSSNILLSQGFEPQLSDFGLAIWGPTTSSFLTQEDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGREPISSEPFKGQESLVVWAKPIIESGDIKGLLDPNLEGKFDEAQMQRMVLAASLCITRAARLRPKLNQVLRILKGDEKVEHIFNSHGNDHDDSENQENIDDEVYPYSSAELHLSLALLGVDDDRASCCSTDHSNSEHLKEQWSRSSSFD 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4141g00081 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Gabi4141g00081 661 ProSiteProfiles Protein kinase domain profile. 314 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4141g00081 661 Gene3D Transferase(Phosphotransferase) domain 1 389 602 - -
Gabi4141g00081 661 PANTHER OS08G0249100 PROTEIN 180 611 IPR046958 -
Gabi4141g00081 661 SMART serkin_6 314 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4141g00081 661 MobiDBLite consensus disorder prediction 168 192 - -
Gabi4141g00081 661 SUPERFAMILY Protein kinase-like (PK-like) 295 585 IPR011009 -
Gabi4141g00081 661 Pfam Protein kinase domain 315 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4141g00081 661 CDD USP_Like 8 116 - -
Gabi4141g00081 661 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 116 - -
Gabi4141g00081 661 FunFam Putative receptor-like serine/threonine-protein kinase 389 601 - -
Gabi4141g00081 661 MobiDBLite consensus disorder prediction 243 262 - -
Gabi4141g00081 661 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 283 388 - -
Gabi4141g00081 661 Gene3D Phosphorylase Kinase; domain 1 287 388 - -
Gabi4141g00081 661 MobiDBLite consensus disorder prediction 247 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4141g00081 Gabi-Chr4141 596904 600688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4141g00081 267 596 Trihelix Transcription Factor Family AT5G38560 41.935 2.94e-75 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gabi4141g00081 Pkinase 1.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4141g00081 - - gmx:100789189 1069.68