Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4141g00047 ATGGGTGAGAGAGTGAGTGGGAAAGTGAAATGGTTCAATGACCAGAAAGGGTTTGGGTTCATAACCCCTGACGATGGCGGCGAGGAACTCTTTGTTCACCAATCTTCCATAAGATCTGAAGGGTTTCGGAGCCTCGCCGAAGGAGAGTCCGTTGAGTTCATCATCGACTCCGACTCTAACGGACGATCTAAGGCTGTTGATGTTACTGGCCCCGACGGGTCTAATGTCCAGGGAAGCCGACGCGGCGGCGGCGGTGGTGGAGGAGGCGGTTATGGTGGTGGAGGAGGAGGAGGCAACAGAGGCTATGGTGGTGGTGGTAGGGACTCTGGCTACGGTGGTGGTAGGAGCGATGGATACGGTGGTGGAGGATACGGAGGCTCTGGGCGAGGTGGCGGAAGAGGAGGCGGCGGCGGCGGCGGCGGAGGTTGTTACAACTGTGGTGAGTCGGGTCACTTGGCTAGGGACTGCTACCAAGGAGGCAGTGGCGGTGGTGGTGGTGGTGGAGGAAGGTACAGCGGTGGAGGCGGCGGCGGCGGTGGCGGTGGGAGCTGCTACAGCTGTGGTGAGTCTGGGCACTTTGCTAGGGATTGCCCAACCAGCGCTCGTTGA 609 0.6026 MGERVSGKVKWFNDQKGFGFITPDDGGEELFVHQSSIRSEGFRSLAEGESVEFIIDSDSNGRSKAVDVTGPDGSNVQGSRRGGGGGGGGGYGGGGGGGNRGYGGGGRDSGYGGGRSDGYGGGGYGGSGRGGGRGGGGGGGGGCYNCGESGHLARDCYQGGSGGGGGGGGRYSGGGGGGGGGGSCYSCGESGHFARDCPTSAR 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4141g00047 202 Gene3D - 179 202 - -
Gabi4141g00047 202 Gene3D - 133 165 - -
Gabi4141g00047 202 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Gabi4141g00047 202 MobiDBLite consensus disorder prediction 59 94 - -
Gabi4141g00047 202 Pfam Zinc knuckle 183 198 IPR001878 GO:0003676|GO:0008270
Gabi4141g00047 202 Pfam Zinc knuckle 142 156 IPR001878 GO:0003676|GO:0008270
Gabi4141g00047 202 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Gabi4141g00047 202 SUPERFAMILY Nucleic acid-binding proteins 3 70 IPR012340 -
Gabi4141g00047 202 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Gabi4141g00047 202 ProSiteProfiles Zinc finger CCHC-type profile. 184 198 IPR001878 GO:0003676|GO:0008270
Gabi4141g00047 202 MobiDBLite consensus disorder prediction 161 180 - -
Gabi4141g00047 202 FunFam Cold shock protein 1 1 69 - -
Gabi4141g00047 202 ProSiteProfiles Zinc finger CCHC-type profile. 143 156 IPR001878 GO:0003676|GO:0008270
Gabi4141g00047 202 SUPERFAMILY Retrovirus zinc finger-like domains 135 200 IPR036875 GO:0003676|GO:0008270
Gabi4141g00047 202 CDD CSP_CDS 5 70 IPR002059 GO:0003676
Gabi4141g00047 202 SMART c2hcfinal6 142 158 IPR001878 GO:0003676|GO:0008270
Gabi4141g00047 202 SMART c2hcfinal6 183 199 IPR001878 GO:0003676|GO:0008270
Gabi4141g00047 202 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Gabi4141g00047 202 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Gabi4141g00047 202 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Gabi4141g00047 202 Gene3D - 2 82 IPR012340 -
Gabi4141g00047 202 PANTHER COLD SHOCK DOMAIN PROTEIN 2 112 199 - -
Gabi4141g00047 202 SMART csp_8 6 71 IPR011129 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4141g00047 Gabi-Chr4141 345431 346527 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Gabi4141g00047 CSD 8.9e-26 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4141g00047 - - aew:130784753 168.318