Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4141g00041 ATGCTTCTGGACAAGAATGCCATTCAGGAAACCCATTATGAGGTTCTCAATGTCAAGGAAGATGCAAGTTATGAAGAAATTCGTGCTAGTTACCGTAATGCTGTACTCAGTTTACATCCTGATAAACTATTGAAGACATCCGAGACATCATCCAGCAGTAATCAAACAAATGGAGAGAGGTTTCTCAAAGTACAAAAGGCATGGGAAGTTCTAAGCAATTCAAGCTCTCGGTTATTGTATGATAATGAACTGCGAAGTTCGAGGCGGGATGTACTGGCTGCTGAAGTTGCAGAAGATGTAAGCTTGCAGGATATGATAGCTGAAGATGCTGGAGATGCATTGGAACTGTTTTATCAGTGCCGATGTGGTGATTACTTCTCTGTCGACTCCTTGGAATTGCAGAAAATGGGATATTCTTTGTTGAAGGAAGGAAATAGGCTATCTATACTCAGCATTGATACTTTATCAGGATCAGTTATTCTTCCCTGCGGATCTTGTTCGTTAAAAGCTCGTCTGGTAATCAGTATTGTTGACAATTGA 540 0.4056 MLLDKNAIQETHYEVLNVKEDASYEEIRASYRNAVLSLHPDKLLKTSETSSSSNQTNGERFLKVQKAWEVLSNSSSRLLYDNELRSSRRDVLAAEVAEDVSLQDMIAEDAGDALELFYQCRCGDYFSVDSLELQKMGYSLLKEGNRLSILSIDTLSGSVILPCGSCSLKARLVISIVDN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4141g00041 179 CDD DnaJ 11 73 IPR001623 -
Gabi4141g00041 179 Pfam CSL zinc finger 99 173 IPR007872 -
Gabi4141g00041 179 PRINTS DnaJ domain signature 13 31 IPR001623 -
Gabi4141g00041 179 PRINTS DnaJ domain signature 31 46 IPR001623 -
Gabi4141g00041 179 PRINTS DnaJ domain signature 56 76 IPR001623 -
Gabi4141g00041 179 SUPERFAMILY Chaperone J-domain 10 84 IPR036869 -
Gabi4141g00041 179 SUPERFAMILY CSL zinc finger 96 176 IPR036671 -
Gabi4141g00041 179 Pfam DnaJ domain 11 81 IPR001623 -
Gabi4141g00041 179 Gene3D DnaJ domain 2 89 IPR036869 -
Gabi4141g00041 179 SMART dnaj_3 10 76 IPR001623 -
Gabi4141g00041 179 ProSiteProfiles DPH-type metal-binding (MB) domain profile. 96 175 IPR007872 -
Gabi4141g00041 179 ProSiteProfiles dnaJ domain profile. 11 84 IPR001623 -
Gabi4141g00041 179 Gene3D DPH Zinc finger 90 179 IPR036671 -
Gabi4141g00041 179 PANTHER DPH3 HOMOLOG-RELATED 11 176 IPR044248 GO:0017183|GO:0046872
Gabi4141g00041 179 FunFam DNAJ heat shock N-terminal domain-containing protein-like 90 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4141g00041 Gabi-Chr4141 306365 310071 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4141g00041 12 95 C2H2 Transcription Factor Family AT1G74250 39.286 4.87e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4141g00041 K17867 - gmx:100814856 271.166