Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4141g00026 ATGAGCTCTCGGACAGGCAGGAGCACTGCTGTCAGAAGCTACCGGCGGAGGAAGACAGTTTTGGACTTAGACCTTAACCGTGTACCTGCTGGTGGTGAGAATCGTGAGCAGGAGGGACCTTCAACTCAGTTGGGGTCTCAAGAAGTTCAAACTAACCAGCAACCACAGGTTGTACAACCTGCGTTGATCGATGTGGAGGTCATTGATGATGATGTTGTTGAATCTACCCCAAGGGCTTTTGCAGAGGCTAAAAACAATTCAAGAAGAAATCGTGGGAGGACTATAGTTGATGTGGATTTAGAAGATCAGAATAGGGTAACCAACAATAATCGCAACAAACGAAGAAGAGAATCCCCAAACCGAATGATTATTAATTGTGAACTTTATATAAATTTGGAAGGCCGTAGCAGTTCTATGAGGGAAAATGTTAAAAAGCCTCCTGAACCTCCTAAGGAGCCTGTTTTCAACTGTCCAATATGTATGGGTCCTTTGGTAGAAGAAATGTCGACAAGGTGTGGTCATATTTTTTGCAAGAATTGCATCAAGGCTGCTATAACTGCTCAGAGTAAATGCCCTACATGTAGAAAAAAGGTTACTGCGAAAGAACTAATAAGGGTGTTTCTCCCATCAACTAGTTGA 639 0.4304 MSSRTGRSTAVRSYRRRKTVLDLDLNRVPAGGENREQEGPSTQLGSQEVQTNQQPQVVQPALIDVEVIDDDVVESTPRAFAEAKNNSRRNRGRTIVDVDLEDQNRVTNNNRNKRRRESPNRMIINCELYINLEGRSSSMRENVKKPPEPPKEPVFNCPICMGPLVEEMSTRCGHIFCKNCIKAAITAQSKCPTCRKKVTAKELIRVFLPSTS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4141g00026 212 MobiDBLite consensus disorder prediction 22 56 - -
Gabi4141g00026 212 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Gabi4141g00026 212 ProSiteProfiles Zinc finger RING-type profile. 157 195 IPR001841 -
Gabi4141g00026 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 210 IPR013083 -
Gabi4141g00026 212 SMART ring_2 157 194 IPR001841 -
Gabi4141g00026 212 PANTHER ELFLESS, ISOFORM B 1 212 - -
Gabi4141g00026 212 Pfam Zinc finger, C3HC4 type (RING finger) 156 194 - -
Gabi4141g00026 212 SUPERFAMILY RING/U-box 156 201 - -
Gabi4141g00026 212 MobiDBLite consensus disorder prediction 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4141g00026 Gabi-Chr4141 206452 213204 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4141g00026 12 211 C3H Transcription Factor Family AT5G48655 53.202 6.14e-52 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4141g00026 K22651 - gmx:100792853 295.049