Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4141g00024 ATGGTGGTGATCATGCAACAGCAACAGCAACAGCAGCAGAATCCCTCTGCACTGGTGCCACAACTCAACAATCCTCAACCTTCTTCAACCACCACCGCCACCGCCGCCACCTCCCTTAGGTCACCCTCCACCGTCGCCGCCACCCAGTCCCAGCTACCTTCGCCTCTCTCTCTTCTTCCCCACCGCCAAGCCCTACTCTCCCCGCCTCTCGCCGCAGCTCTCCCGTCCGGGGAGCCCGCTCTGACGGCGGCGCCGGCGACGACGTCCCCGTTGATCAGAATCCGGCTCTCGGATATTGCCCCCTATGATGGTGCGCCGGCAGGGCCCTATGTAAGAGCAATGGAAGCATTGTCTGGGTCTCTGACGAGGCACAATGCGGCGTTGATCGAATTAGGTAGTGAAGACACTGCTCTCATGCGTTGTGGCTTAGAAGGTGCAAGGTTGTTTTTCAGAAGCAGAGCGCACATGGGTGTTGGCAAAGGAAGCCGTGGGGTTTACATGTACAGAGCAGGAAGGGCTTTGGAGGATTGGGATTCATCTCCTCCTTGCATGGCTGATATTTTTAGGTGCATGGGAAAGGCATCTCGTTCTGCTTTGTGTGCCATTGCAAGGCATCTGCGCCTTAGAAGCGATGTTTTTAATCATCTGCTTGATGATGCTCCATTGCCTTCTAACGAGGTGTCCTCATCGGTTCTTGTTGTAACTTACTCACATGCTTCTTTGCAAAATGGCAAAGGTGCTATTGGAGGTGGTAAGCCTACCATGAATGGTGAAGTTGAGAAGGGGCTGTTGACATTGATATCTTCTGACACTCCTGGTCTTCAGGTATGTGATTCCAATGGCCGCTGGTATCTGGCAGACAGTGGGTCTGGGCCTGGAGATCTTCTATTGATAACAGGCAAGGCGCTTAGCCATGCTACTGCAGGCCTACGTCCTGCTGCATCATATAGAGCTTCTCCTGATTATTTTCTGACCCCTAATAGTGGAGGAAGGACTTCTCTTGCATATAGACTCATGCCACAGGGCAATGCTATATTAGATTGTTCTCCAATTGCAGCAGCTGGCCATGCTATTCCCCAAAGCTATGTTCCAATATCTGTAAGCCAATTTATGGATGATCTTACTGCTGAAGAGCTGATAGGCAACAGATGCGATAGTGCTGACGTTGCTCAAAACAATGTGAATAAAGAACCATCATTAAGAAGCGTTCTATCAGATCCGTTGTCTGGCACATTCCTTGAAGATGCCATGCTCGTCTCATGTGGACATTCTTTTGGTGGTCTCATGCTGAGGAGAGTCATCGAAACATCAAGATGTACTCTCTGCAATTCAGATATTGAGACTGGTCCTCTGATCCCTAATCTTGCTCTTAGAGCTGCAGCTGCTGCTGTAAAGCATGAGGATGATCGAAGGTTATTTCGTAATGCTGCTCTCCGAAAGCGGCGGAAAGAAATGGGTGACCAGATGGATTCAATGAGAAGAGTGAACAGGGAAAATGGAGATTTTGCTGGTGCTGATGGAATCCAGCGGGGAGTACAATATCCATTTTCGGTAAATGAGAAAGTTATAATTAAGGGTAACAGGAGAACACCAGAAAAATTTGTTGGGAAAGAAGCTGTCATTACGTCTCAGTGTCTCAATGGCTGGTATTTGCTCAAGATTATTGGAACTGGAGAGAATGTCCGCCTGCAGTACCGTTCTCTTAGGAAGCTCTTAAATTCATCAGCCATGGAGGACCAGTGCCCCTCACAGCCAATGCAAACTAGCAGCTCTTAA 1776 0.4927 MVVIMQQQQQQQQNPSALVPQLNNPQPSSTTTATAATSLRSPSTVAATQSQLPSPLSLLPHRQALLSPPLAAALPSGEPALTAAPATTSPLIRIRLSDIAPYDGAPAGPYVRAMEALSGSLTRHNAALIELGSEDTALMRCGLEGARLFFRSRAHMGVGKGSRGVYMYRAGRALEDWDSSPPCMADIFRCMGKASRSALCAIARHLRLRSDVFNHLLDDAPLPSNEVSSSVLVVTYSHASLQNGKGAIGGGKPTMNGEVEKGLLTLISSDTPGLQVCDSNGRWYLADSGSGPGDLLLITGKALSHATAGLRPAASYRASPDYFLTPNSGGRTSLAYRLMPQGNAILDCSPIAAAGHAIPQSYVPISVSQFMDDLTAEELIGNRCDSADVAQNNVNKEPSLRSVLSDPLSGTFLEDAMLVSCGHSFGGLMLRRVIETSRCTLCNSDIETGPLIPNLALRAAAAAVKHEDDRRLFRNAALRKRRKEMGDQMDSMRRVNRENGDFAGADGIQRGVQYPFSVNEKVIIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKLLNSSAMEDQCPSQPMQTSSS 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4141g00024 591 SUPERFAMILY RING/U-box 400 466 - -
Gabi4141g00024 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 468 IPR013083 -
Gabi4141g00024 591 MobiDBLite consensus disorder prediction 1 44 - -
Gabi4141g00024 591 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 88 583 - -
Gabi4141g00024 591 SUPERFAMILY Clavaminate synthase-like 181 371 - -
Gabi4141g00024 591 Gene3D - 158 399 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4141g00024 Gabi-Chr4141 175101 182910 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4141g00024 382 570 Plant U-box Gene Family AT5G05230 39.062 1.67e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4141g00024 - - gmx:100807199 946.036