Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4141g00018 ATGGCTTCAGCATTCGTCAAGCTCGATGATTCCCCAATGTTCCAGAAGCAGTTATTTTCTCTTGAAGAAACAACTGATGAGTTAAAGGATCGGTGCCAGAAACTATACAAAGGGTGCAAGAAGTTTATGACAGCTTTGGGGGAAGCATTAAATGGAGAAATTGCCTTTGCTGATTCATTAGAAGCATTTGGCGGTGGCCTGGATGACCCTGTTAGCGTATCAATTGGAGGACCTGTTATATCTAAGTTTATTAACTCACTGCGTGAGCTAGCTAGTTTTAAAGAGCTTCTTCGTTCACAGGTAGAGCATGTGTTGATTGACCGGCTGTCGGAGTTTATGAATGTTGATTTGCAAGAAGCAAAGGATTCTCGTCGCCGTTTTGACAAAGCTGTGCATTCTTATGATCAGTCGCGAGAAAAGTTTGTGTCCTTGAAGAAGAATACGCCGGAAGACATTGTTGCTGAATTAGAAGAGGATCTACAAAATTCAAAGTCAGCATTTGAAAAAAGTCGCTTCAATCTAGTAAACTCTCTCATGAATATTGAAGTGAAAAAGAAGTATGAGTTCTTGGAGTCCGTTAGTGCAATAATGGATGCTCATCTGAGATACTTTAAGCTGGGTTATGACTTACTGAGCCAAATGGAGCCCTATATTCACCAGGTGCTAACGTACGCGCAACAGTCTAAAGAACAGGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATCCAGGAATACAGAACACAGGCGGAGCTGGAAAATACAAGAGCTTCTAGCAGCTATTCAGAATCTGTGCCAGGTGCTGATGGCACCCGTATTGTAGGTTTGAACTCTTACAAAAGCATTGAAGCAGGGATGCAGTCTGCAACCAAAGGGGAGATTCAAACAGTTAAACAGGGCTATCTGTTAAAACGATCATCAAGTGCGCGAGATTGGAAACGGAGGTTCTTTGTACTTGATAACCACGGGAATTTATATTATTACAGAGTGAAAGGAGCCAAACCCATGGGTTCTCAGTCATATAATTATACTCGTTCTTCTGAACAAAATAGTGGCATGTTTGGTAGATTCCGTGCAAGGCACAACAGGGCAGCGTCGTTAAATGAGGATAGTTTGGGCTGTTTTGCAATTGATCTGTGCACATCCACTATAAAGATGGATGCAGAGGATACAGATCTACGACTTTGCTTCCGTATAATTTCTCCCTCAAAAACATATACACTGCAGGCTGAAAATGAAGCTGATAGGATGGACTGGGTAAACAAAATTACTGGAGCTATCACATCGGTTTTTAATTCTCAATTTCTTCAACAGCCTCATTATGGTAGATTGCATTTAGAAAATAAAAACTCAGCAATTGGTGCTTCTTTGACAAGTCAATCAGAGGATAGTCATAACTCTTTGATGGATGACATATGTTCCAAGGAAGTGGGTAGTGTCTCTAAGATTTTAAGGGGAATTCCTGGGAATGATAAGTGTGCTGAGTGCAGTGCTCCTGAACCAGACTGGGCATCTCTAAACCTTGGCATATTGCTGTGTATTGAATGTTCTGGAGTGCATCGAAATCTTGGAGTTCATATCTCAAAGGTTAGATCTATAACATTAGATGTTAAGGTTTGGGAACCTACCGTTTTGGAGTTATTTGATAACTTAGGTAATGCTTATTGTAATTCTGTCTGGGAGGGCTTGCTTCAACTTAATGATGAAAGAGTGGGTGAATCAAATGTGCCTATGAAACCATGCACCACAGATGCATTCCAAGACAAGGAAAAGTACATCCATGCAAAGTATGTAGAGAAATCACTAATCATCCGGGAAGATGATATACCTGGGAATCCATCAGTTTCCATAAGAATCTGGCAAGCAGTTAAGGCTATAAATGTACGAGAGGTGTATCACCTTATTGTCACATCAACTTCAAATCCGGTAAACACGAAATATGATGATGTGTTTCCGCATGCTGATACTGAAGGGCAACAGCATGATCCTGAAGCCTGTCTGAGAATTAAAGAGACTAATGAGACAGAAAGGTGTTTCCATGGTTGGTCATTATTACATCTGTCATGTCATTCTGACAGTGCACTAATGGTTGAGTTGTTACTCCAATTTGGTGCTGATATAAACATGCGTGACTATCATGGAAGGACTCCCTTGCACCATTGCATTTCTACTGGGAAAAATCCATTGGCAAAGTTTCTACTGAGAAGGGGCGCAAGACCGTCAGTTAAAGATGCTGGTGGACACACTGTACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGACGAAGAGCTATTTATCTTGCTTGCTGAATGCCAATAA 2322 0.4104 MASAFVKLDDSPMFQKQLFSLEETTDELKDRCQKLYKGCKKFMTALGEALNGEIAFADSLEAFGGGLDDPVSVSIGGPVISKFINSLRELASFKELLRSQVEHVLIDRLSEFMNVDLQEAKDSRRRFDKAVHSYDQSREKFVSLKKNTPEDIVAELEEDLQNSKSAFEKSRFNLVNSLMNIEVKKKYEFLESVSAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKEQANIEQDKLAKRIQEYRTQAELENTRASSSYSESVPGADGTRIVGLNSYKSIEAGMQSATKGEIQTVKQGYLLKRSSSARDWKRRFFVLDNHGNLYYYRVKGAKPMGSQSYNYTRSSEQNSGMFGRFRARHNRAASLNEDSLGCFAIDLCTSTIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAITSVFNSQFLQQPHYGRLHLENKNSAIGASLTSQSEDSHNSLMDDICSKEVGSVSKILRGIPGNDKCAECSAPEPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTVLELFDNLGNAYCNSVWEGLLQLNDERVGESNVPMKPCTTDAFQDKEKYIHAKYVEKSLIIREDDIPGNPSVSIRIWQAVKAINVREVYHLIVTSTSNPVNTKYDDVFPHADTEGQQHDPEACLRIKETNETERCFHGWSLLHLSCHSDSALMVELLLQFGADINMRDYHGRTPLHHCISTGKNPLAKFLLRRGARPSVKDAGGHTVLERAMEMGAITDEELFILLAECQ 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4141g00018 773 Gene3D - 292 434 IPR011993 -
Gabi4141g00018 773 Gene3D Arf GTPase activating protein 460 609 IPR038508 -
Gabi4141g00018 773 PRINTS HIV Rev interacting protein signature 532 553 IPR001164 GO:0005096
Gabi4141g00018 773 PRINTS HIV Rev interacting protein signature 490 509 IPR001164 GO:0005096
Gabi4141g00018 773 PRINTS HIV Rev interacting protein signature 509 526 IPR001164 GO:0005096
Gabi4141g00018 773 ProSiteProfiles BAR domain profile. 3 227 IPR004148 GO:0005515|GO:0005737
Gabi4141g00018 773 Gene3D Arfaptin homology (AH) domain/BAR domain 7 252 IPR027267 -
Gabi4141g00018 773 SUPERFAMILY Ankyrin repeat 673 765 IPR036770 -
Gabi4141g00018 773 SUPERFAMILY ArfGap/RecO-like zinc finger 480 603 IPR037278 -
Gabi4141g00018 773 Gene3D - 616 764 IPR036770 -
Gabi4141g00018 773 SUPERFAMILY BAR/IMD domain-like 8 317 IPR027267 -
Gabi4141g00018 773 Pfam Ankyrin repeats (3 copies) 676 744 IPR002110 GO:0005515
Gabi4141g00018 773 Coils Coil 229 249 - -
Gabi4141g00018 773 SUPERFAMILY PH domain-like 295 440 - -
Gabi4141g00018 773 Pfam PH domain 297 427 IPR001849 -
Gabi4141g00018 773 ProSiteProfiles Ankyrin repeat region circular profile. 713 744 - -
Gabi4141g00018 773 PANTHER CENTAURIN/ARF 3 770 IPR045258 GO:0005096
Gabi4141g00018 773 SMART ANK_2a 713 742 IPR002110 GO:0005515
Gabi4141g00018 773 SMART ANK_2a 680 709 IPR002110 GO:0005515
Gabi4141g00018 773 CDD ArfGap 482 597 - -
Gabi4141g00018 773 ProSiteProfiles Ankyrin repeat profile. 713 745 IPR002110 GO:0005515
Gabi4141g00018 773 CDD PH_ACAP 298 432 - -
Gabi4141g00018 773 ProSiteProfiles ARF GTPase-activating proteins domain profile. 478 610 IPR001164 GO:0005096
Gabi4141g00018 773 CDD BAR_SFC_plant 16 217 IPR035670 -
Gabi4141g00018 773 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Gabi4141g00018 773 SMART arf_gap_3 478 610 IPR001164 GO:0005096
Gabi4141g00018 773 Pfam BAR domain of APPL family 8 233 IPR004148 GO:0005515|GO:0005737
Gabi4141g00018 773 ProSiteProfiles PH domain profile. 295 428 IPR001849 -
Gabi4141g00018 773 ProSiteProfiles Ankyrin repeat profile. 680 712 IPR002110 GO:0005515
Gabi4141g00018 773 Pfam Putative GTPase activating protein for Arf 482 602 IPR001164 GO:0005096
Gabi4141g00018 773 SMART PH_update 296 430 IPR001849 -
Gabi4141g00018 773 ProSiteProfiles Ankyrin repeat region circular profile. 680 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4141g00018 Gabi-Chr4141 125186 138469 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4141g00018 490 604 C2H2 Transcription Factor Family AT4G21160 38.525 4.05e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4141g00018 K12489 - gmx:100796006 1354.73