Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4134g00049 ATGGTATCCAAAAACCCGAACCCCTCAGAAGCTTTCTACTTGGATCCTAATGACATGACGCTGCCTGGCCTCGTCCCCTTTTCCTCCGCCGCCTCCACCTCCGATTCGGTGGAGGACTCCGCCAAGAAGACCCGTAAACCATACACTATCACCAAGTCTAGGGAGAGCTGGACCGAACCCGAGCATGACAAATTCCTTGAAGCTCTTCAACTGTTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGACAGTTATCCAGATTCGTAGCCATGCACAGAAATACTTTCTAAAAGTTCAGAAGAGTGGGACAAGTGAACATCTTCCGCCACCCAGACCAAAAAGAAAATCTGCTCATCCATATCCTCAGAAAGCTTCCAAAAATGTATCAGGATCCTTTCAATCTTCATCGGCTTTGCTTGAACCTGGATACATCCTAGAGCATGATTCTTCAGCAATGCTTAAAACTCCTATTATTAACACTTCAGTGTCTTCCTGGTCAAACAACACCTTGCAGAAAACTGCCAATGTATTGAAAGGGCAAAATGTGAATAATTGTTGCAGTAGCAGTGAAAGCACTCCTAGAGCACGGCTGGTTGGTGAATCTAATGGTCAAAGGAATAATAGCCATCCTTTTAGAGTTCTTCCAGATTTTACTCAAGTATACAGCTTCATTGGCAGTGTATTTGACCCAAATGTAACTGGACATCTACAGAAACTAAGAAGTATGGACCCTATAGATGTTGAGACGGTGCTACTGTTGATGAGAAACCTTTCTATCAATTTAACAAGCCCAGATTTTGAGGATCATAGAAGACTGCTTGCGTCATATGAGGTGGAACCCAAGACAGATAACTATATCAATGCAGATCGACCAATGTATGATGAGCAGTTGAAGAGTGCAACTTAG 918 0.4314 MVSKNPNPSEAFYLDPNDMTLPGLVPFSSAASTSDSVEDSAKKTRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHLPPPRPKRKSAHPYPQKASKNVSGSFQSSSALLEPGYILEHDSSAMLKTPIINTSVSSWSNNTLQKTANVLKGQNVNNCCSSSESTPRARLVGESNGQRNNSHPFRVLPDFTQVYSFIGSVFDPNVTGHLQKLRSMDPIDVETVLLLMRNLSINLTSPDFEDHRRLLASYEVEPKTDNYINADRPMYDEQLKSAT 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4134g00049 305 Gene3D - 57 104 - -
Gabi4134g00049 305 Pfam Myb-like DNA-binding domain 54 99 IPR001005 -
Gabi4134g00049 305 PANTHER SWI/SNF COMPLEX-RELATED 31 266 - -
Gabi4134g00049 305 MobiDBLite consensus disorder prediction 103 137 - -
Gabi4134g00049 305 CDD SANT 56 99 IPR001005 -
Gabi4134g00049 305 ProSiteProfiles SANT domain profile. 52 103 IPR017884 -
Gabi4134g00049 305 SUPERFAMILY Homeodomain-like 48 104 IPR009057 -
Gabi4134g00049 305 ProSiteProfiles Myb-like domain profile. 49 99 IPR001005 -
Gabi4134g00049 305 SMART sant 53 101 IPR001005 -
Gabi4134g00049 305 NCBIfam myb-like DNA-binding domain, SHAQKYF class 52 101 IPR006447 GO:0003677
Gabi4134g00049 305 FunFam protein REVEILLE 6 isoform X1 56 104 - -
Gabi4134g00049 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 103 IPR017930 -
Gabi4134g00049 305 MobiDBLite consensus disorder prediction 25 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4134g00049 Gabi-Chr4134 754798 760075 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi4134g00049 Myb_DNA-binding 3.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4134g00049 - - gmx:100794389 512.686