Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4134g00041 ATGGTCCTGGGTTGTTTCAGTAGCTGCATTTCGAGCCAGATTGATTTGGGCTCGAGATTATTGGCTAGCAAGGACCAAACATGGGTTTCAGATAATGGAACATTTGCTTTGGGGTTCACTCCAGCAGAGTCTGATAATCGATTATTTAATCTGGGAATTTGGTTTGCTGAGCTTCCTGGAGATCGAACCTTAGTTTGGTCACCCAATAGAGACTCCCCAGTATCTCAAGATGCAATCTTGGAGCTTGACACCACTGGCAACCTCGTTCTCATGGATGGAGACACCACCATATGGGCCTCAAACACCTCTGGTGCTGGTGTAGAAGCAGCAGTCATGGCAGAATCTGGAAACTTCATCATCCACAACACCAACAACCACCCTGTGTGGCAGAGTTTTTCTCAACCTTCGGACACACTCCTCCCAAACCAGCCTCTTACAGTTTCTTTAGAGTTAACATCATCAAAGTCTTCCTCTCATGGTGGCTACTATGCTCTCAAAATGCTTCAACAGCCTACTTCCTTAAGCCTTGCACTGACTTACAATCTGCCAGAAACTTACCCGGCTTTAGATGAATCATATACCAACTATTCTTACTGGCAAGGCCCTGATATCTCCAATGTCACAGGAGAAGTTATAGCAGTTTTAGATCAAGCTGGAAGCTTTGGAATTGTATATGGAGAATCATCTGAAGGAGCAGTTTATGTGTATAAGAATGATGATGATGATGCAGGCTTGTCTTCTGCAGTTCACCAATCTACACCATTAGCTGTTCTTCGGAGACTGACACTGGAAAAGAATGGCAATTTGCGTTTGTACCGTTGGGATGATGATGTAAACGGGTCAAGACAGTGGATGCCAGAGTGGGCTGCAGTTTCAAATCCTTGTGATGTTGCTGCAATTTGTGGCAATGGGGTTTGTAACTTGGATAGAAGTAAGACAAAAGCCTCTTGCACTTGCTTGCCAGGGACTTCTAAAGTTGGCAGGGATGGCCAATGCTTTGAGAATTCATCTCTTGTTGGAAAATGCAATGCTAAGCATGAAAACCAGACATCCCAGTTTAGGATTTCAGTGGTGCAGCAAACCAATTATTATTTTTCTGAATTTTCAGTAATAGCTAACTATAGTGATGTTGCCAGTGTATCAAAATGTGGGGATGCTTGCTTATCAGATTGTGATTGTGTTGCTTCTGTTTATGGGCTAAATGAGGAGAGACCATACTGCTGGGTGTTGAGGAGCTTAAATTTTGGTGGTTTTGAGGATACCAGCTCCACTTTGTTTGTGAAGGAAAGAGTAAATAATGGCTCATGGACACCAGAAGGCCAAGTAGGAGGGTCTAATAGCTCTTCTGATGGATTGGGGAGTGCCAAGGAGAAGGCTGTGATTATTCCCATTGTTCTAAGCATGACAGTTCTCATTGCTTTGCTATGTTTATTACTATATTACAGTGTTCACAGAAAAAGAACTTTGAGAAGAGAGATGGAAAGTTCCTTGATATTATCAGGTGCTCCAATGAATTTCACCTTCCGTGATTTGCAAATCAGGACATGCAACTTTTCACAGCTGCTAGGAACAGGTGGATTTGGGAGTGTGTACAAAGGAAGCCTGGGAGATGGTACCTTAGTTGCAGTGAAGAAACTTGAAAGGGTTTTGCCCCACGGAGAGAAAGAATTTATCACTGAAGTAAACACCATTGGCTCAATGCATCATATGAATTTGGTTCGCCTATGCGGCTATTGTTCAGAGGGATCACACCGGCTTCTGGTTTATGAGTTCATGAAGAATGGGTCCTTGGATAAATGGATCTTCCCTTCATATCAAGGGCGAGATAGAGTACTAGATTGGCCAACTCGTTTTAATATAGCCATAACCACTGCTCAAGGGATTGCATACTTTCATGAGCAGTGCAGAAATCGGATAATACATTGTGACATTAAACCAGAAAATATATTGTTAGATGAAAACTTTTGTCCTAAAGTATCTGATTTTGGACTGGCCAAATTGATGGCAAGGGAGCACTCTCATGTGGTAACAATGGTCAGAGGCACTAGAGGTTATTTGGCACCAGAATGGGTTAGTAATCGCCCTATAACTGTTAAAGCTGATGTTTACAGCTATGGGATGCTTCTTTTAGAGATCATTGGTGGCAGGAGAAATCTTGACATGTCCTTTGATGCAGAGGACTTCTTCTATCCTGGTTGGGCTTACAAGGAGTTGACAAATGGATCAACAATCAAAGTTGCAGATAGAAGATTAAATGGGGCAGTTGATGAAGAAGAGCTAATGAGAGCTCTGAAAGTTGCCTTTTGGTGTATCCAAGATGAGGTATTCATTCGACCAACAATGGGGGAAATAGTGAGGATGCTAGAAGGTTCAATGGACATTAATATGCCACCAATGCCGCAAACAGTACTCGAGTTAATTGAGGAAGGCCTAGACCATGTATACAAAGCTATGAAAAGAGAGTATAACCAGTTCAGCTCATTCACCATTAACAGTCATCTTACATCTCATGCCACATGTAGCAATTCCACAATGTCACCAAGATAG 2547 0.4244 MVLGCFSSCISSQIDLGSRLLASKDQTWVSDNGTFALGFTPAESDNRLFNLGIWFAELPGDRTLVWSPNRDSPVSQDAILELDTTGNLVLMDGDTTIWASNTSGAGVEAAVMAESGNFIIHNTNNHPVWQSFSQPSDTLLPNQPLTVSLELTSSKSSSHGGYYALKMLQQPTSLSLALTYNLPETYPALDESYTNYSYWQGPDISNVTGEVIAVLDQAGSFGIVYGESSEGAVYVYKNDDDDAGLSSAVHQSTPLAVLRRLTLEKNGNLRLYRWDDDVNGSRQWMPEWAAVSNPCDVAAICGNGVCNLDRSKTKASCTCLPGTSKVGRDGQCFENSSLVGKCNAKHENQTSQFRISVVQQTNYYFSEFSVIANYSDVASVSKCGDACLSDCDCVASVYGLNEERPYCWVLRSLNFGGFEDTSSTLFVKERVNNGSWTPEGQVGGSNSSSDGLGSAKEKAVIIPIVLSMTVLIALLCLLLYYSVHRKRTLRREMESSLILSGAPMNFTFRDLQIRTCNFSQLLGTGGFGSVYKGSLGDGTLVAVKKLERVLPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRLLVYEFMKNGSLDKWIFPSYQGRDRVLDWPTRFNIAITTAQGIAYFHEQCRNRIIHCDIKPENILLDENFCPKVSDFGLAKLMAREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIIGGRRNLDMSFDAEDFFYPGWAYKELTNGSTIKVADRRLNGAVDEEELMRALKVAFWCIQDEVFIRPTMGEIVRMLEGSMDINMPPMPQTVLELIEEGLDHVYKAMKREYNQFSSFTINSHLTSHATCSNSTMSPR 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4134g00041 848 SMART blect_4 19 135 IPR001480 -
Gabi4134g00041 848 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Gabi4134g00041 848 PANTHER OS07G0415500 PROTEIN 6 800 - -
Gabi4134g00041 848 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 592 798 - -
Gabi4134g00041 848 SMART serkin_6 516 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4134g00041 848 ProSitePatterns Protein kinases ATP-binding region signature. 522 545 IPR017441 GO:0005524
Gabi4134g00041 848 Pfam Protein kinase domain 519 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4134g00041 848 ProSiteProfiles Protein kinase domain profile. 516 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4134g00041 848 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 150 IPR036426 -
Gabi4134g00041 848 PIRSF SRK 1 841 IPR024171 GO:0004674
Gabi4134g00041 848 FunFam serine/threonine-protein kinase PBS1-like 484 591 - -
Gabi4134g00041 848 Pfam D-mannose binding lectin 63 149 IPR001480 -
Gabi4134g00041 848 Pfam S-locus glycoprotein domain 234 322 IPR000858 GO:0048544
Gabi4134g00041 848 Gene3D Transferase(Phosphotransferase) domain 1 592 804 - -
Gabi4134g00041 848 ProSiteProfiles Bulb-type lectin domain profile. 13 133 IPR001480 -
Gabi4134g00041 848 CDD B_lectin 23 135 IPR001480 -
Gabi4134g00041 848 FunFam Serine/threonine-protein kinase 15 133 - -
Gabi4134g00041 848 CDD STKc_IRAK 522 790 - -
Gabi4134g00041 848 Gene3D - 9 135 IPR036426 -
Gabi4134g00041 848 Gene3D Phosphorylase Kinase; domain 1 480 591 - -
Gabi4134g00041 848 SUPERFAMILY Protein kinase-like (PK-like) 494 789 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4134g00041 Gabi-Chr4134 667590 671272 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4134g00041 466 798 Receptor kinase-like Gene Family AT5G20050 43.333 2.79e-83 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gabi4134g00041 Pkinase 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4134g00041 - - gmx:100794281 1522.68