Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4134g00020 ATGCGTTGTCATTCTCTGCTGCTATTGTGGATTCATTTCTTTCTCTTCATCAGCCTCAGTTTTCTGTCACTTTCTGTTTCTTTCTTGCCTTCAGAAAACGTCACCCTCTATGGTGACGCCTTCTTCGCTGACAATGCCATTAGTCTCACCAAGGAACTCACTTGCTTTTCTTCTTCTTCTTCTGGAATGGGAAGAGCTTTCTACGTGTACCCTGTTCGCTTTCTTGATCCTGTGACAAACTCCACTGCTTCTTTTACATGCCGCTTCTCTTTCTCAATCATTTCCTCTCCTTCTTGCCCTTCTGGGGATGGCATTGCTTTTCTCATAGCATCAAGCACCGACTTTGCAAGCCTCTCACGTGGTTATATGGGTCTTCCTGCACCTGTTTTGAACCAACAAGATTCATACTTTGCTGTGGAATTTGACACCAGTTTTGATCCTTCACTTGGTGACACCAACGGGAACCACATTGGCATTGATGTCAGCAGTGTCGTATCTTTTGCTTCCGTGGATGCTCTTTCTCGTGGAATTGATATCAAAAGTGGGAAACTCATCACTGCGTGGATAGAGTATAGAGATGCCATGAAAATGGTTCGTGTGTGGGTTGGTTACTCTTCAACTAGGCCTCCAACTCCCATTCTTGCTTCCCAGATAGACCTTTCCGAGAAGTTCAAGGAGTTCATGCATGTGGGTTTCTCTGCCTCTAATGGACAGGGCTCAGGTATTCACCTTGTTGATCATTGGCAATTCAAAACTTTTGGTTACTCCCTTTCAGTGAGTCCTATGGATTTGGTAGAAGAAGGAGATTGCTTCTTGTGTTATGCAGGGGATTCAACTACATCCACCCGGCACAGTGATGCACATCACAGAAGGAAAAGGATTGGGGAGATGGCTCTTGGATTGGGAGGCATAACAGCATTTGTGGTGTCAGCATTGGCAGCAGTGGTTGTAATCTGTGTTTTCTTGACAAAGAAAAAGGGTGTTGTTAGACAGATTAGGGATGGCCAAAGTTGTAGATTTCAGACATCAAAAGTGCCCACGAAATTGTCACTTTCAGAGATCAAATCAGCCACAATGGGGTTTAATCGAGATAGGCTTGTTGGGGAAGGTGCATCAGCAAAGGTTTATAAAGGATCTCTTCCATTTGGAGGAGATGTGGCAGTGAAAAGATTTGATAGAGCTAATGATTTAGGCTGTTTGCCCAATCCTTTCGCCACTGAGTTTGCTACAATGGTGGGTTGCTTGAGGCACAAAAATTTGGTTCAGCTTAAGGGATGGTGCTGCGAAGGAAGTGAGTTGGTCCTGGTTTATGAGTTCCTACCAAATGGGAGCCTCAATAAAGTTCTTCATGGAAACTTCAATTCTTCAATTGTCCTTTCATGGAAGCAAAGAGTTAATATAGTTCTGGGTGTTGCTTCTGCTCTTACCTATCTTCACGAAGAATGTGAGAGGCAAATCATTCATAGAGATGTCAAGACCTGCAACATAATGCTTGATGCAGATTTCAATGCCAAGCTAGGGGATTTTGGACTTGCAGAAGTGTATGAACATAGTTCTATTACTAGGGATGCTACTATACCAGCAGGAACAATGGGGTATCTTGCTCCTGAATATGTTTATTCTGGTGTTCCTACTGTGAAGACTGATGTGTACAGCTTTGGGGTAGTGGTGTTAGAAGTTGCAACTGGGAGGAAGCCTGTGGAAGATGATGGCACTGTGGTTGCTGATTATGTGTGGAAGTTGTGGGAAAAGAATAAACTCATTGAAGCTGCTGATCCAAGATTGATGGGAAAGTTTGATGCATTAGAGATGGAAAGGATGCTTCAGGTGGGGCTTCTTTGTGTACACCCTGACTATGACAAGAGACCAAGAGTGAGAGAAGCAAGTAGAATTCTTAAGAAAGAAGCACCACTTCCCTCGTTGCCTCCCAGCAAACCAAGGGTGATAATTAGGCCTATTTGTCCAAATGATACACCCGAAACACAAAATGTTATCGGAGATTGGCTCAGTACAGATGAGGCTCCATATTTCACACCTAGGAGTCAATTTAACTAG 2055 0.437 MRCHSLLLLWIHFFLFISLSFLSLSVSFLPSENVTLYGDAFFADNAISLTKELTCFSSSSSGMGRAFYVYPVRFLDPVTNSTASFTCRFSFSIISSPSCPSGDGIAFLIASSTDFASLSRGYMGLPAPVLNQQDSYFAVEFDTSFDPSLGDTNGNHIGIDVSSVVSFASVDALSRGIDIKSGKLITAWIEYRDAMKMVRVWVGYSSTRPPTPILASQIDLSEKFKEFMHVGFSASNGQGSGIHLVDHWQFKTFGYSLSVSPMDLVEEGDCFLCYAGDSTTSTRHSDAHHRRKRIGEMALGLGGITAFVVSALAAVVVICVFLTKKKGVVRQIRDGQSCRFQTSKVPTKLSLSEIKSATMGFNRDRLVGEGASAKVYKGSLPFGGDVAVKRFDRANDLGCLPNPFATEFATMVGCLRHKNLVQLKGWCCEGSELVLVYEFLPNGSLNKVLHGNFNSSIVLSWKQRVNIVLGVASALTYLHEECERQIIHRDVKTCNIMLDADFNAKLGDFGLAEVYEHSSITRDATIPAGTMGYLAPEYVYSGVPTVKTDVYSFGVVVLEVATGRKPVEDDGTVVADYVWKLWEKNKLIEAADPRLMGKFDALEMERMLQVGLLCVHPDYDKRPRVREASRILKKEAPLPSLPPSKPRVIIRPICPNDTPETQNVIGDWLSTDEAPYFTPRSQFN 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4134g00020 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Gabi4134g00020 684 SMART serkin_6 361 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4134g00020 684 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524
Gabi4134g00020 684 FunFam L-type lectin-domain containing receptor kinase S.6 324 439 - -
Gabi4134g00020 684 FunFam L-type lectin-domain containing receptor kinase S.6 17 266 - -
Gabi4134g00020 684 Gene3D Phosphorylase Kinase; domain 1 323 439 - -
Gabi4134g00020 684 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 258 IPR013320 -
Gabi4134g00020 684 CDD lectin_legume_LecRK_Arcelin_ConA 33 254 IPR001220 GO:0030246
Gabi4134g00020 684 Gene3D - 19 259 - -
Gabi4134g00020 684 Gene3D Transferase(Phosphotransferase) domain 1 440 637 - -
Gabi4134g00020 684 CDD STKc_IRAK 367 634 - -
Gabi4134g00020 684 Pfam Legume lectin domain 27 252 IPR001220 GO:0030246
Gabi4134g00020 684 Pfam Protein kinase domain 362 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4134g00020 684 FunFam L-type lectin-domain containing receptor kinase VIII.1 440 650 - -
Gabi4134g00020 684 SUPERFAMILY Protein kinase-like (PK-like) 346 648 IPR011009 -
Gabi4134g00020 684 ProSiteProfiles Protein kinase domain profile. 361 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4134g00020 684 PANTHER - 50 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4134g00020 Gabi-Chr4134 417464 419748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4134g00020 1 684 Receptor kinase-like Gene Family AT5G42120 55.666 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gabi4134g00020 Pkinase 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4134g00020 - - lang:109346768 1027.7