Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4134g00018 ATGACGTTTGGAAGTATAACTAGGCAAGTTAAAGAAGAGGAAGACAATGAAACAAATAGCAATCATGAAAATCACCATGCTACAACATCAAGTCATGCAAGTGTGAAAAAAATGTATCCTTGCAAGTTTTGTAATAAGAAGTTCAGCACTGGAAAAGCTTTGGGTGGGCACCAGAATGCCCATAGAAGGAAGAGAGAAGCAGCAAAAAGAGAAAAGATTCTTAGCATGACGTCTGCTCCTAAAAATTCACTCCCCAATTTTCAATCTCACAGTTTTGGCTTTACTTCACCTTATGTGCAACTCAAAGATGACTCATATCGTAATTCATGGCTAGGGCAACAAATGGTGAATTGTGCACAACCAACCACGCATGGGACAACCTTGATGTCCCACGAATCAAATCAATTTGCTTATTTTTCCATGCAAGGAGGAAAATCACAAAGTTCAGAGCAACAACAACAGTCACAAAGATCTCAGAGTTCTACCGCAAAGGAGATTGATTTCATTAGCAAGCTTGCACATAATAAGAAAATTTCTTATCAAGCAAGCAATTCTTCAAGGAGGCCTCGTAATGAAAATATAGAGGTGATTGATTTGACTCTCAGGCTTTGA 612 0.3856 MTFGSITRQVKEEEDNETNSNHENHHATTSSHASVKKMYPCKFCNKKFSTGKALGGHQNAHRRKREAAKREKILSMTSAPKNSLPNFQSHSFGFTSPYVQLKDDSYRNSWLGQQMVNCAQPTTHGTTLMSHESNQFAYFSMQGGKSQSSEQQQQSQRSQSSTAKEIDFISKLAHNKKISYQASNSSRRPRNENIEVIDLTLRL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4134g00018 203 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Gabi4134g00018 203 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Gabi4134g00018 203 SUPERFAMILY beta-beta-alpha zinc fingers 36 65 IPR036236 -
Gabi4134g00018 203 MobiDBLite consensus disorder prediction 1 32 - -
Gabi4134g00018 203 Gene3D Classic Zinc Finger 9 91 - -
Gabi4134g00018 203 MobiDBLite consensus disorder prediction 142 164 - -
Gabi4134g00018 203 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 18 203 IPR044246 GO:0009788
Gabi4134g00018 203 MobiDBLite consensus disorder prediction 8 22 - -
Gabi4134g00018 203 Pfam C2H2-type zinc finger 39 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4134g00018 Gabi-Chr4134 391945 392556 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4134g00018 31 80 C2H2 Transcription Factor Family AT5G14010 46.000 6.51e-12 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4134g00018 zf-C2H2_6 3.4e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4134g00018 - - aprc:113851019 95.5153