Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4134g00012 ATGGATTTCGTTGAAGGCGTGGGAGAGAGCTCATCGCCTCCGCGCACCTTCAGCGGTTACAGCAACTACGATGTGAGGAACGACGTGTACAATCGCTTGATGGAAACCGGCCACGACCAAGCCGTGTCGAATCCCGAGTTTCGCGAACAGCTGGAAGCTCACTTCAATCGCTTGCCTCCAAGTTATGGACTTGATGTTAATATCGATAGAGCTGAAGATGTTCTATTGCATCAGACCCTTCTTGCTTTGGCAAGAGACCCAGACAAGCGCCCCGTCTATCATATACGCTTCTTGGAGAATATTTCTACTAGAACAGATGGTGAAGATCAACAAATTGTAAATACTCATTCTGTCCTAGGGTCAACTTCACATGCAACAAATGGGGGAGCTGTATCATCTCATAAGAGTACAATGAGGGATCTTGCAACTGAGTTTGAGCCCTGCTCGAAGCTTGAGGACCTAAATTTGGATGTTAGAAAGAACTCCAAGGAGACAGAGGAAAAATTTCTTACTGACAACTTTTCCCAGAGGCATGAACTTTCAAGTGTCCCAGTTCATGAAATAATATTTTCCACTGTTGACAAGCCAAAGCTTTTAAGCCAGTTGTCTGCTTTGCTGTCTGAAATTGGGCTTAACATCCGTGAAGCACATGTTTTCTCCACAACTGATGGCTACTCCCTTGATGTGTTTGTGGTGGATGGATGGCCAGTAGAGGAAACAGATGATTTGTATGATGCTATGGAAAAAGCTGTAGCAAGAAGTGAGGGGTCATGGTCTCGTTCTTCAAATTCTCATTCAGCTGTGGAGAAAGCCTTAGCAGCAGAAGGAAAATCTGGAGATTGGGAAATAGACAGGAGGTTGTTAAAGATAGGAGAAAGAATAGCATCTGGATCCTGTGGAGATTTATATCGTGGAGTTTATATTGGTGAAGATGTTGCTGTTAAGGTTCTGAGATCTGAGCAACTGAATGATGCCTTAGAGGATGAGTTTGCTCAAGAAGTAGCAATTCTGAGGCAGGTCCATCATAAAAATGTTGTTCGTTTCATTGGTGCATGTACAAAGTGTCCACATTTGTGTATAGTAACAGAGTATATGCCTGGAGGAAGTCTGTATGATTATTTGCACAAAAATCATAATGTGTTGGAGCTGTCTCAATTACTAAAGTTTGCAATTGATGTCTGCAAGGGTATGGAGTATTTGCATAGAAACAACATAATTCACAGGGATCTGAAGACGGCCAATTTGCTGATGGATACACACAATGTTGTTAAAGTAGCAGATTTTGGAGTTGCTCGGTTCCTAAATCAGGGGGGAGTAATGACAGCAGAAACTGGAACGTATAGATGGATGGCACCAGAGGTGATAAACCATCAGCCCTATGATCAGAAAGCAGATATATTCAGTTTTTCCATAGTACTGTGGGAACTAGTGACAGCAAAGGTACCATATGATACCATGACTCCATTACAAGCTGCCCTGGGTGTGAGACAGGGACTACGACCAGAACTTCCAAAGCATGGACACCCTAAACTATTAGATTTGATGCAAAGATGTTGGGAAGCAATTCCAAGCAGTCGTCCATCCTTCAATGAGATAACAGTTGAACTTGAAAATCTTTTACAAGAAATTGAGAACGATTCGGAAGCTAACGGTGCTTGA 1659 0.428 MDFVEGVGESSSPPRTFSGYSNYDVRNDVYNRLMETGHDQAVSNPEFREQLEAHFNRLPPSYGLDVNIDRAEDVLLHQTLLALARDPDKRPVYHIRFLENISTRTDGEDQQIVNTHSVLGSTSHATNGGAVSSHKSTMRDLATEFEPCSKLEDLNLDVRKNSKETEEKFLTDNFSQRHELSSVPVHEIIFSTVDKPKLLSQLSALLSEIGLNIREAHVFSTTDGYSLDVFVVDGWPVEETDDLYDAMEKAVARSEGSWSRSSNSHSAVEKALAAEGKSGDWEIDRRLLKIGERIASGSCGDLYRGVYIGEDVAVKVLRSEQLNDALEDEFAQEVAILRQVHHKNVVRFIGACTKCPHLCIVTEYMPGGSLYDYLHKNHNVLELSQLLKFAIDVCKGMEYLHRNNIIHRDLKTANLLMDTHNVVKVADFGVARFLNQGGVMTAETGTYRWMAPEVINHQPYDQKADIFSFSIVLWELVTAKVPYDTMTPLQAALGVRQGLRPELPKHGHPKLLDLMQRCWEAIPSSRPSFNEITVELENLLQEIENDSEANGA 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4134g00012 552 Coils Coil 529 549 - -
Gabi4134g00012 552 SUPERFAMILY Protein kinase-like (PK-like) 278 540 IPR011009 -
Gabi4134g00012 552 FunFam Serine/threonine-protein kinase isoform 1 278 366 - -
Gabi4134g00012 552 CDD STKc_MAP3K-like 294 536 - -
Gabi4134g00012 552 ProSiteProfiles Protein kinase domain profile. 288 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4134g00012 552 SMART serkin_6 288 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4134g00012 552 Gene3D Transferase(Phosphotransferase) domain 1 366 551 - -
Gabi4134g00012 552 Pfam Protein tyrosine and serine/threonine kinase 288 535 IPR001245 GO:0004672|GO:0006468
Gabi4134g00012 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672|GO:0006468
Gabi4134g00012 552 SUPERFAMILY ACT-like 186 255 IPR045865 -
Gabi4134g00012 552 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 136 541 - -
Gabi4134g00012 552 Gene3D Phosphorylase Kinase; domain 1 277 365 - -
Gabi4134g00012 552 ProSiteProfiles ACT domain profile. 187 261 IPR002912 -
Gabi4134g00012 552 PRINTS Tyrosine kinase catalytic domain signature 464 486 IPR001245 GO:0004672|GO:0006468
Gabi4134g00012 552 PRINTS Tyrosine kinase catalytic domain signature 507 529 IPR001245 GO:0004672|GO:0006468
Gabi4134g00012 552 PRINTS Tyrosine kinase catalytic domain signature 445 455 IPR001245 GO:0004672|GO:0006468
Gabi4134g00012 552 PRINTS Tyrosine kinase catalytic domain signature 399 417 IPR001245 GO:0004672|GO:0006468
Gabi4134g00012 552 PRINTS Tyrosine kinase catalytic domain signature 362 375 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4134g00012 Gabi-Chr4134 238500 262869 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4134g00012 24 543 MAP Kinase Kinase Kinase AT2G17700 50.281 4.08e-179 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gabi4134g00012 PK_Tyr_Ser-Thr 2.4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4134g00012 - - gmx:100797987 1025